| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_0245 |
|---|
| Symbol | |
|---|
| ID | 5867942 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | - |
|---|
| Start bp | 286507 |
|---|
| End bp | 287307 |
|---|
| Gene Length | 801 bp |
|---|
| Protein Length | 266 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 641545325 |
|---|
| Product | NLPA lipoprotein |
|---|
| Protein accession | YP_001666494 |
|---|
| Protein GI | 167031263 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1464] ABC-type metal ion transport system, periplasmic component/surface antigen |
|---|
| TIGRFAM ID | [TIGR00363] lipoprotein, YaeC family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 0.590029 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 43 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTTGAGA AACTGTTCCG GCCCGTCGCG GCCATTGCCT TCACACTGGG CCTGTCCGCC
AGCGCCCTGG CAGCCGAACC GCTGAAGATC GGCACCACCT CGGCCTTTGC CATTCCGCTG
GAAGCCGCAG TGGAGGAAGC ACACAAGCAA GGCCTGGAAG TGAAGCTGAT CGAGTTCAGC
GACTGGATTG CGCCCAATGT CAGTCTCAAC AGTGGCGACA TCGACGTGAA CTACTTCCAG
CACATCCCGT TCCTGGAAAA CGCCAAAGCC GCTGCGGGCT TCAACCTGGT GCCCTACGCC
TCGGGCATCA TCAACAACGT TGGCCTGTAC TCGAAAACGT ACAAAAGCTT CGCCGACCTG
CCAGAAGGCG CCAGCGTGGC CATCGCCAAC GACCCGATCA ACAGCGGCCG GGGCCTGCAA
CTGCTGGCCA AGGCCGGGCT GATCACCCTG AAGCCAGGCG TTGGCTACAA GGCCACCGAG
GACGACATCG TCACCAACCC GAAAAAGCTG AAAATCCTGC AGGTCGAGGC GGTTCAGCTG
GTGCGCGCCT ACGATGACGC CGACCTGGTG CAGGGTTACC CGGCCTACAT CCGCCTGGCC
AATACCTTCG ATGCCACCTC GGCGTTGCTG TTCGATGGCC TGGAAAACAA GGAATACGTG
ATCCAGTTCG TCATCCGCCC ACAAAGCAAG GACGACCCAC GCCTGGCCAA GTTCGTCGAC
ATCTACCAGC ACTCGCCTGT GGTACGCGCA GCGTTGGACA AAGCCCACGG CAAGCTCTAC
CAAGCTGGCT GGGAAGGCTG A
|
|---|
| Protein sequence | MLEKLFRPVA AIAFTLGLSA SALAAEPLKI GTTSAFAIPL EAAVEEAHKQ GLEVKLIEFS
DWIAPNVSLN SGDIDVNYFQ HIPFLENAKA AAGFNLVPYA SGIINNVGLY SKTYKSFADL
PEGASVAIAN DPINSGRGLQ LLAKAGLITL KPGVGYKATE DDIVTNPKKL KILQVEAVQL
VRAYDDADLV QGYPAYIRLA NTFDATSALL FDGLENKEYV IQFVIRPQSK DDPRLAKFVD
IYQHSPVVRA ALDKAHGKLY QAGWEG
|
|---|
| |