| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_0144 |
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| Symbol | |
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| ID | 5867832 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | + |
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| Start bp | 146456 |
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| End bp | 148384 |
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| Gene Length | 1929 bp |
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| Protein Length | 642 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 641545217 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_001666396 |
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| Protein GI | 167031165 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 35 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 37 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTGAAG ACGCAGAGCG CTGGAAAGAA AAATACCTGA AAAGCATCGA GCAGCAAGAA
AGGCTCGAAC GCCGTTGGGA TGCCCGTCTT GACTTGCTGC GTCGCGGCCT GGTGCGTAGC
ACCCTGGCTG CCGAAGGCAG TGACAAGATC GTCGATGAGT GCATGAAGGA AATGCGCGAT
GTCATCCGCA GCGACAATAT GGACGCCGGC CTTGCCGGGT TGATTCCGCG CCTTGAAAAA
GCGGTGTTGG ACTCCGAACA GCGTCGCGAA ACCCGCATGA ACCAAGTCAG CGATGCGCTG
ACCGCACTGG TTGGCCAACT GCAAGGCTTA CCGCTGCCCA GCGATATCTC GCGGCCATTG
AAAAAACTGG CGAAGAAGCT CGACGGCGGG GTTGCCCAGT CACGCGAGCT GCCGCCGCTG
CTGGGCGAGT TGAGCGGCCT GCAGGGGCGC GCGCTGTCGG CCTTGGGCAA ACCCGGCGAA
GACGCCCGGC CAGGTTTTCT GCAGCGTTTG TTCGGCAGCC GCGAAGAAGA AACACTGGCG
GAGGCAGAGC ATGCGCCGGT GGCCGAAGCC CAGCCCCAGG CAGCGGGCAG CATCGCACTC
TTGCCGCCCG ATGACGTCGA TGCGCTACAA CCGTTGCCGG GCCCTGCTGC CTCCTGCGCC
GAAGTGACTG ACGCACCCGA GGCTGAGCTG GAAGTTTCTG GCCCGGCGCT GATCGAGTCG
GTCGAAACGC AGCCCGCCTC GTTGCCACAG ATGCCACAGG ATGAAGCACC AGTGGCAGAA
GCTGCCGCCA GCGAGCCGTT GGCTGAGGCA GAGCCGCTAC CGACACTGGA AGAAACCTTC
GGCGAAGACG GCCCCTATGC CCTGCCCTAC GCGGTGGAGC CGCCTTACAG CCAGGTTGCC
GCGCACATCG AGCAAACCTT GATCGGCCTG CTCGATGACC TCAGCCTGCC CGAGCGGCAC
AAGGCCCAGG CGTTGGAAAT GCGCGAGCGG GTTGCCCGCG GCTTGAACTG GTATGAGCTG
ATCCCGGTGC TGGATGATCT GGCGGTACTC ATGCTGGCGA TTACCGACAG CGGCCAGCAC
GAATTTGAAA CCTACCTGCA GCAGCTCAAC GAACGCCTGG AAGGTTTCCA GAGCCACTTG
CATGAAGCCA GCGCCGGCCA TGCAGACAAC AGCAGTGCGG CCCGCGAGCT GGATAGCCAA
CTGCGCGAGC ACGTCGATGG CCTGCAGAGC AGCGTGCAAG GCGCCGCCGA CGTAGACAGC
CTCAAGCACA TCCTGGAAAA CCGCCTGGAA GGCTTGCTGG TGACCATGGA CGAGCACAAG
CATGAGCGTG ATCGCCGTGA GCAAGAGCTG GCTGGCCGTC TGCAAGGCCT GTCGGAGCGG
GTGGCGAACA TGGAGCACGA GGCGCTTGGC TATCGCGAGC ATCTGGAGGA GCAGCGCCAG
AAAGCCCTGC TCGACCCGCT CACTGGCCTG CCCAACCGTG CCGCCTGGAG CGAGCGAGTC
GAACGCGAAA TGCTCGACTG GCAAGAAAAC GGTGGCCATC TGGCGATGGC AATTCTCGAC
CTTGACCATT TCAAACGCAT CAATGACAGC TATGGGCACC TGGCTGGAGA CAAGGTCCTC
AAGATCGTTG CCGACCAGTT GCGCAAGCGC CTGCGTGGTC GTGATTTCAT CGCCCGTTTT
GGCGGCGAAG AGTTCGTCTT GCTGCTACCG CAGACCCCGC CGGCGGCCGC CGCACAGGTG
GCCGAGCTGC TGCGTGCCAC CGTCGAGGCC TGCCCATTTC ACTTCAAGGG TGAACGGGTG
GTGATCACTA CCTCCATCGG TCTGGGCGCA TTCCGTCCTG GCGAGCGCAG CGACCAAGTG
CTCAAGCGCG CCGATGCCGC GTTGTACCGG GCCAAGGAGC ATGGGCGCAA TCGCGTCGAA
CAAGGTTAG
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| Protein sequence | MTEDAERWKE KYLKSIEQQE RLERRWDARL DLLRRGLVRS TLAAEGSDKI VDECMKEMRD
VIRSDNMDAG LAGLIPRLEK AVLDSEQRRE TRMNQVSDAL TALVGQLQGL PLPSDISRPL
KKLAKKLDGG VAQSRELPPL LGELSGLQGR ALSALGKPGE DARPGFLQRL FGSREEETLA
EAEHAPVAEA QPQAAGSIAL LPPDDVDALQ PLPGPAASCA EVTDAPEAEL EVSGPALIES
VETQPASLPQ MPQDEAPVAE AAASEPLAEA EPLPTLEETF GEDGPYALPY AVEPPYSQVA
AHIEQTLIGL LDDLSLPERH KAQALEMRER VARGLNWYEL IPVLDDLAVL MLAITDSGQH
EFETYLQQLN ERLEGFQSHL HEASAGHADN SSAARELDSQ LREHVDGLQS SVQGAADVDS
LKHILENRLE GLLVTMDEHK HERDRREQEL AGRLQGLSER VANMEHEALG YREHLEEQRQ
KALLDPLTGL PNRAAWSERV EREMLDWQEN GGHLAMAILD LDHFKRINDS YGHLAGDKVL
KIVADQLRKR LRGRDFIARF GGEEFVLLLP QTPPAAAAQV AELLRATVEA CPFHFKGERV
VITTSIGLGA FRPGERSDQV LKRADAALYR AKEHGRNRVE QG
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