| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mext_4560 |
|---|
| Symbol | |
|---|
| ID | 5835572 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylobacterium extorquens PA1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010172 |
|---|
| Strand | - |
|---|
| Start bp | 5091859 |
|---|
| End bp | 5093865 |
|---|
| Gene Length | 2007 bp |
|---|
| Protein Length | 668 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 641370354 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001641999 |
|---|
| Protein GI | 163853956 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0628] Predicted permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 0.119566 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCCGCCGC GCCCAGCGCG TGTTTCCGCG GCCGAGACGC CCAAAGGTCC GCTCGCCTCC
TCCCTCGTCG TGTTTGCCAT CATCGTGGCG GGCCTCTTCT TCGCGCGCGA GGTGCTGATC
CCCATCGCGA TCGCGGTGCT GCTGTCCTTC GTGCTCGGCC CGCTGGTGAA CTTCCTGCGC
CGGCTGAAGC TGGGGCGCGC CTTCGCGGTG CTGGTCTCGG TGCTGCTCGC CGCCGGGATC
ATCGCTGCGG TGACCACCGT CATCGGTGTG CAGGTCGCCG AACTCGCGCA GGACGTGCCG
CGCTACCAGC GCACCGTCGA GCGCAAGATC GAGGGGCTGC GGGCCGGCAC GCTCGGCCAG
ACGATGGACT ACATCGCCAA CATCAACCGG GCGATCCACC AGAGCGGCGA GGAGAGCAAG
GAATCAGCCG AGAAGGCCAA GCAGCAGGCC GCCCGCGACA GTAACCGCAA GGCCGAGCCG
GAGCCGCCGA AGCCGCTCTT GGTCCAGGTG GAGGAGCGCC GCCCGGGCCC GCTCGAACTC
GCCACCACCG TGCTGGCGCC GGTGGCGCAG CCGCTCGCCA CCGCCGGCAT CGTCTTCGTC
GTGCTCCTGT TCATCCTGAT GCAGCGGGAG GATCTGCGCG ACCGCCTGAT CCGGCTCGCC
GGTTCGAGCG ACCTCCACCG CACGACCGTG GCGATGGACG ACGCGGCCCG GCGGCTCTCG
CGCTACTTCC TGGGCCAGCT CGCCCTCAAC TCCGCCTTCG GCGTCGTCAT TGGCGTCGGG
CTCTGGATCA TCGGCGTGCC GAGCCCCGTG CTGTGGGGCA TCTTCGCCCT CGTCATGCGC
TTCGTGCCCT ATATCGGCGC CTTCCTCTCG GCGGTCCTGC CGATCGCGCT TGCGGCGGCG
GTCGATCCGG GATGGAGCAT GGTGCTGTCG ACCTTCCTGC TCTTCGCCCT CGTCGAGCCC
ATCGTCGGGC AGATCATCGA GCCCCTGGTC TACGGCCACT CGACGGGCGT CTCGCCGTTC
TCGGTGCTGG TCTCGGCCCT GTTCTGGACC TGGCTCTGGG GACCGGTGGG CCTCCTGCTC
TCGACGCCGC TCACCGTCTG CCTCGTCGTG CTCGGGCGCC ACGTCGATCG GCTCGAATTC
CTCGACGTGC TGTTCAGCAA CCGCCCGGCG CTGACGCCGA TCGAGAACTT CTACCAGCGC
ATGCTCGCCG ACGACCCGGA GGAGGCGCAG GAACATGCCG ACCTGATCCT GCGCGAATGC
TCGCTCTCGG CCTATTACGA CGACGTCGTG CTGAAGGGTC TCGAACTCGC CTCCCGCGAC
GCCGCCCGCG GCGTGCTGAC GCCGAGCCAG AAGGACGAGA TCCGCGCCTC GATCACGGCT
TTGGTGGAGG ATCTGGAGGA TCGCGAGGAT GCCGTGCCCG ATCCGGCCTC CAAACCCACC
CGCCTCTTCG ACGGGGCAGG CGCCGCTGGC GACGGGGAGA GCGCCTGCAA GAACGGGCCG
ATCGCCGACC CCGACCCCGA CGAGTTGCCC GCCGCGTGGC AGGCCGACGG TGCGGTGCTT
CTCGTCTCCG GCCGCGGCTT CCTCGACGGG GCGGCGACCG CCATCGCCGA CCAGCTCCTG
CGCAAGCGCG GCTTCGGCAC CCGGCAGGTG CCCTTCGCCG AGGTCGCCCG GGTGCGCATC
GCCGAGTGGC AGCCGGGTCC GGCTCAAGCG GTCTGTGTGA TCTCGCTGGC GCTGTCCGGC
GAGCCGACCC ACCTGCGCCG CCTCGTCTCG CGGCTGCGCC AGAAGATCGA CACGGTGCCG
ATCGTCGCCG GGTTGTGGCG CCTCGACGAG CCGATGCTCG CCGACGACGC GGTGCGGGCC
AAGATCGGCG CGGACGATCA CGTTACCTCT CTGCGCGACC TGATCGAGAC GATCCTCGCC
CTCGCCCGCA ACGAGGGCGG CCCGGACCGG TCCGAGCGGA GCGATGCGGC CACACCCCCG
CGGCAGGCCC TGCCCGAGCC GGCTTGA
|
|---|
| Protein sequence | MPPRPARVSA AETPKGPLAS SLVVFAIIVA GLFFAREVLI PIAIAVLLSF VLGPLVNFLR
RLKLGRAFAV LVSVLLAAGI IAAVTTVIGV QVAELAQDVP RYQRTVERKI EGLRAGTLGQ
TMDYIANINR AIHQSGEESK ESAEKAKQQA ARDSNRKAEP EPPKPLLVQV EERRPGPLEL
ATTVLAPVAQ PLATAGIVFV VLLFILMQRE DLRDRLIRLA GSSDLHRTTV AMDDAARRLS
RYFLGQLALN SAFGVVIGVG LWIIGVPSPV LWGIFALVMR FVPYIGAFLS AVLPIALAAA
VDPGWSMVLS TFLLFALVEP IVGQIIEPLV YGHSTGVSPF SVLVSALFWT WLWGPVGLLL
STPLTVCLVV LGRHVDRLEF LDVLFSNRPA LTPIENFYQR MLADDPEEAQ EHADLILREC
SLSAYYDDVV LKGLELASRD AARGVLTPSQ KDEIRASITA LVEDLEDRED AVPDPASKPT
RLFDGAGAAG DGESACKNGP IADPDPDELP AAWQADGAVL LVSGRGFLDG AATAIADQLL
RKRGFGTRQV PFAEVARVRI AEWQPGPAQA VCVISLALSG EPTHLRRLVS RLRQKIDTVP
IVAGLWRLDE PMLADDAVRA KIGADDHVTS LRDLIETILA LARNEGGPDR SERSDAATPP
RQALPEPA
|
|---|
| |