| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mext_2527 |
|---|
| Symbol | |
|---|
| ID | 5831389 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylobacterium extorquens PA1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010172 |
|---|
| Strand | + |
|---|
| Start bp | 2835677 |
|---|
| End bp | 2837365 |
|---|
| Gene Length | 1689 bp |
|---|
| Protein Length | 562 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 641368328 |
|---|
| Product | thiamine pyrophosphate binding domain-containing protein |
|---|
| Protein accession | YP_001639992 |
|---|
| Protein GI | 163851949 |
|---|
| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0028] Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 39 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGGTCA CGACACTCGA CTCCCTGTCC GAGCGGCGCG GCGCCGACGT TCTGCTGGAG
GTGCTGCGCT CGGAGGGCGT GCGCTACATC TTCGGCAATC CGGGCACGAC CGAGTTGCCG
CTGATCGACG CGCTGACGGA CGCGCCCGAC ATCGCCTACG TGCTCGCCCT TCAGGAGGCG
AGCGCCGTCG CCATGGCCGA CGGCTACGCG CAGGGTGCGC GCCGGCCGGG CTTCCTCAAC
CTGCACACGG CCGGCGGCCT CGGCCACGGC ATGGGCAATC TGCTCAACGC CCAGATCTCC
GGCACGCCGC TCGTCGTCAC CGCCGGCCAG CAGGATTCGC GGCACGTCAT CACCGACCCG
CTGCTGTTCG GCGACCTGAC CACCATCGCG GCGCCCACGG TGAAGTGGGC GCGCGAGGTG
ACCCATGCCG ACCAGCTTCC GGTGCTGCTG CGCCGTGCCT TCCACGATTC CGCGGCGGCG
CCCTCGGGGC CGGTCTTCCT GTCGCTGCCG ATGGACGTGA TGGAAGCGAT GACCGCCGCG
CCGCTCGGCG AAACCTCGAC CATCGACCAC CACGCGGTCG CCGGCTCCCT CGACCGGCTC
GCGGATCATC TCGCCGGCAT CGCGCCGGGG CGGCTCGCGC TGATCGCCGG CGACGAGGTC
GATGCCAGCG ACGCCTCGAC CCAGGCGGTG CGGCTCGCCG ACCTCCTGGC GGCGCCGGTC
TACGGATCGT CCTGGCCGGC GCATATCCCG TTCCCGACCG CCCACCCGCT CTGGATGGGC
AATCTGCCGA CCAAGGCGAG CGGCATCGCC GAGATTCTCG GCCGCTACGA CGCGGTGTTC
GCGCTCGGCG GCAAGTCGCT CATCACCGTG CTCTACACCG AGGGCTCGGC CGTGCCCCCC
GGCACGCAGG TGTTCCAGCT CTCGGCGGAT GCGCGTGACC TCGGCCGCAC CTACGCAACG
CAGCTCTCGA CGGTAGGCAA CGTGCGCGCC TCCCTCGACG TCTTGCTGCC GCTCCTGGAA
GCGCGGCTCG CGCCGCACGC CGAGACCTAT GCCCGCCTGA GGCGCGAAGC CGTTGCGGCC
TACGACGCCC GCCGGGCCGC GCTCGAGGCC AAGGCGGATG CCGCCTTCGC CGATCCGGTG
ATCCACCCCC TCGTCGCCGC CCGCGAGATC GGCCGGGCCG TGGGGTCGGA CATCGCCATC
ATCGACGAGG CGCCGGCGAC GCTCGGGCAT CTGCGCACGA TCCTGCACAG CACCTGGACG
CGGCAATACT CGTCGATCCG CGGCGGCGTG CTCGGCTGGG GCATGCCGGC CTCGGTCGGC
TTCTCGCTCG GGCTCGACCG GGCGCCGGTG GTCTGCATCG TCGGCGACGG GGCAGCGATG
TACTCGCCCC AAGCGCTCTG GACCGCCGCG CATGAGGGGC TGCCGGTGAC CTTCGTCGTC
ATCAACAACG CCGAGTACAA CATCCTGAAG CAATTCATGA AATCGCAGAC GCACTACGCC
TCGGTGCGCG CGAACCGCTT CATCGCCATG GACCTCACCG AGCCGCGCAT CGACTTCCTG
GCGCTCGCCG CCTCGATGGG CGTACCCTCC CGGCGGGTCG AGCGGGCGGC GGACATCGCC
GGTGCGGTCG AGGCGGGTAT TCGTTCCGGC GCACCGAACC TCGTCGAAGT GGTCGTCAGC
GCCGCGTGA
|
|---|
| Protein sequence | MTVTTLDSLS ERRGADVLLE VLRSEGVRYI FGNPGTTELP LIDALTDAPD IAYVLALQEA
SAVAMADGYA QGARRPGFLN LHTAGGLGHG MGNLLNAQIS GTPLVVTAGQ QDSRHVITDP
LLFGDLTTIA APTVKWAREV THADQLPVLL RRAFHDSAAA PSGPVFLSLP MDVMEAMTAA
PLGETSTIDH HAVAGSLDRL ADHLAGIAPG RLALIAGDEV DASDASTQAV RLADLLAAPV
YGSSWPAHIP FPTAHPLWMG NLPTKASGIA EILGRYDAVF ALGGKSLITV LYTEGSAVPP
GTQVFQLSAD ARDLGRTYAT QLSTVGNVRA SLDVLLPLLE ARLAPHAETY ARLRREAVAA
YDARRAALEA KADAAFADPV IHPLVAAREI GRAVGSDIAI IDEAPATLGH LRTILHSTWT
RQYSSIRGGV LGWGMPASVG FSLGLDRAPV VCIVGDGAAM YSPQALWTAA HEGLPVTFVV
INNAEYNILK QFMKSQTHYA SVRANRFIAM DLTEPRIDFL ALAASMGVPS RRVERAADIA
GAVEAGIRSG APNLVEVVVS AA
|
|---|
| |