| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mext_1941 |
|---|
| Symbol | |
|---|
| ID | 5831825 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylobacterium extorquens PA1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010172 |
|---|
| Strand | + |
|---|
| Start bp | 2161313 |
|---|
| End bp | 2162212 |
|---|
| Gene Length | 900 bp |
|---|
| Protein Length | 299 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 641367741 |
|---|
| Product | squalene synthase HpnC |
|---|
| Protein accession | YP_001639411 |
|---|
| Protein GI | 163851368 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1562] Phytoene/squalene synthetase |
|---|
| TIGRFAM ID | [TIGR03464] squalene synthase HpnC |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 35 |
|---|
| Fosmid unclonability p-value | 0.692084 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGCCG CGCTTCAGAC CGCCAGCGAC GCCCGCACCG GCAAGGGCCA GCACGACGAG
AACTTTCCCG TCGCCTCGCA CCTGATCCAT CCGCGCTACC GCGGCGCGAT CCTGGCCTTC
TACAACTACG TGCGGGCCGG CGACGACGTT GCCGACCACA TCGGCCTGTC GCCCGAGCGC
AAGATCGAGA TGCTCGACGC GCTCGCCGAC GCGCTGACCG GCAAGGGCGG CTCCGACCCC
ACGGTCGAGC CGCTCAAGCG GGAACTCGCG GCCCATCGCC AGCCGCCGAC CCACGCGCTC
GAACTGCTCG ACGCCTTCCG CATGGATGCG CGCAAGTCGC GCTACGCGGA TTGGGACGAG
CTGATCCACT ATTGCCGCTA CTCGGCCATG CCGGTCGGGC GCTTCCTGCT CGACGTGCAC
GGCGAGGATC CGGCGCGGGT CTACCGGACC TCCGACGCGA TTTGCGCCGC GCTGCAGGTG
CTCAACCACC TTCAGGATTG CGGCAAGGAT TTTCGCGATC TCGACCGGGT CTACATCCCC
CTCGACGTCA TGCGGAAGCA TGGCGCCGAC GTGTCGATGC TGGGCGCCGA CCGGGCGAGC
CCGCAACTGC GCGCGGTGAT CCGCGAACTC GCCGAGCGCA CCCTGGTGCT GCTGGACGAG
GGGGCGCCGC TGCCGAACCA GATCGACGAC CTGCGCTTGA GCCTGGAGAT CGCCGCGATC
CATCGCCTCG CCGTCGTCCT GACGAAGGGG TTGCTGACCC GCGATCCGCT CAGCGAGAAA
GTCCATCACG GTAAGGCCGC CTTCGCGCTC ACCGCGCTCG GCGGCATCGC CGCCACGCTG
GTGCGCCGCC CGTTCCGGTC GCGTGCGCCC CGTCCCGCCC CCGCCGGAGC CGGCCGATGA
|
|---|
| Protein sequence | MSAALQTASD ARTGKGQHDE NFPVASHLIH PRYRGAILAF YNYVRAGDDV ADHIGLSPER
KIEMLDALAD ALTGKGGSDP TVEPLKRELA AHRQPPTHAL ELLDAFRMDA RKSRYADWDE
LIHYCRYSAM PVGRFLLDVH GEDPARVYRT SDAICAALQV LNHLQDCGKD FRDLDRVYIP
LDVMRKHGAD VSMLGADRAS PQLRAVIREL AERTLVLLDE GAPLPNQIDD LRLSLEIAAI
HRLAVVLTKG LLTRDPLSEK VHHGKAAFAL TALGGIAATL VRRPFRSRAP RPAPAGAGR
|
|---|
| |