| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mext_0878 |
|---|
| Symbol | |
|---|
| ID | 5834285 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylobacterium extorquens PA1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010172 |
|---|
| Strand | + |
|---|
| Start bp | 956311 |
|---|
| End bp | 957222 |
|---|
| Gene Length | 912 bp |
|---|
| Protein Length | 303 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 641366660 |
|---|
| Product | triple helix repeat-containing collagen |
|---|
| Protein accession | YP_001638354 |
|---|
| Protein GI | 163850311 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 0.0304216 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCGACGA CGCGCGACCT GGGAGCACGA AAGCCAGCCA CTTCGCGAGC CGTTTGGCCG
ACCCTCTCGC CGATCCTGAT CGCGCTGGGC CTCGTCCTTG CCGGACCGGC GGCGGCGCAG
AGCCAGGGCG AGACGCAGTC GCGAGCGGCC CGTGCCAAGG CACCGAGCCC GCCGGTCCAG
CCGATCCAGA TCTGGGACGC GCGCATCGAG GGCGGCGACC TGCGCATGAG CGGCAGCGTG
GGCAAGAGCG GAGTCACCGT GATCCTCGAC GACGACATCT CCGTCCTGTC GGACCGGCGC
GGACGCTTCG AGTTCCGGCT GCCCTACCGG CCGGCGACCT GCGTCGCGAT GGTCAAGGCC
GGCGAGAACG AGCGCGAGGC GGTGGTCGCC AATTGCGCGC CGGAGGGGCC GGCCGGCAAG
GCGGGCGAAC AGGGCCCCGC CGGCCCGCAG GGCAGCGCCG GCCTCCAGGG ACCGCCCGGT
GCCGCCGGGC CGAAAGGCGA TCCGGGCCCG AAGGGTGAGC AGGGGGCCAA AGGCGAGCAG
GGCCTCAAGG GCGAGACCGG GCCAAAGGGT GAAGCGGGTC TGGCCGGTCC TCCGGGCGCG
CCGGGGCCGA AGGGGGATCA GGGCCTCAAG GGTGAGCCTG GACAGAAGGG GGAACCGGGC
TCGAAGGGCG AGCGCGGCCC CAAGGGCGAT CCGGGATCGA AAGGTGAGAC CGCCGCGACG
GTGTCGGCCC CGTTCCGTGT CGTGCGGGCG CGCGCCTGCA CCGATTCGGG CTGTACGCTC
TCCTGCGATG CGGGCGAGGT CCTGGCCTCG GCCACCTGCC AAACGGGCGG CGCGGCGACC
CTCGACGGCG ACACGAAAGC CTCCTGCGCG GCCGGTAGCA GCGGCATGGT CGGAATCTGC
GCCCGGCCCT GA
|
|---|
| Protein sequence | MPTTRDLGAR KPATSRAVWP TLSPILIALG LVLAGPAAAQ SQGETQSRAA RAKAPSPPVQ
PIQIWDARIE GGDLRMSGSV GKSGVTVILD DDISVLSDRR GRFEFRLPYR PATCVAMVKA
GENEREAVVA NCAPEGPAGK AGEQGPAGPQ GSAGLQGPPG AAGPKGDPGP KGEQGAKGEQ
GLKGETGPKG EAGLAGPPGA PGPKGDQGLK GEPGQKGEPG SKGERGPKGD PGSKGETAAT
VSAPFRVVRA RACTDSGCTL SCDAGEVLAS ATCQTGGAAT LDGDTKASCA AGSSGMVGIC
ARP
|
|---|
| |