| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nmar_1674 |
|---|
| Symbol | |
|---|
| ID | 5774026 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrosopumilus maritimus SCM1 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_010085 |
|---|
| Strand | + |
|---|
| Start bp | 1533567 |
|---|
| End bp | 1534310 |
|---|
| Gene Length | 744 bp |
|---|
| Protein Length | 247 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 31% |
|---|
| IMG OID | 641317328 |
|---|
| Product | transcriptional regulator TrmB |
|---|
| Protein accession | YP_001583008 |
|---|
| Protein GI | 161529182 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3398] Uncharacterized protein conserved in archaea |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 37 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTAAGCA TGAGACAAAA ATTAACTGCA AAAGTGAATA GTGAAACGAT ACAAAAAATT
CTAGAATCAA CAGATCAATT CAAAACAGTG TCAGAGATAA GTACAGAATG TAAAATTCCA
AAAAGTACAA CATATCGTAA AATTAAATAT CTTCAAGAAA TAGGAATGCT AGAAGTAACA
GGGTTTATTA CAGATGGAGG ACGAATTAAC AAATACAAGT GTGGAAAATT GTTAAGATAT
GGAAAGTACA ACCCCAAAGT AAAAAAAATT CTTAGTATTA TTACATCAAA TCCAGGTATA
TGCTATAATG AATTACAAGA AAGTTCAGGA ATACCAAATG GCACTCTGAG TCATTATGTA
TCTAGTATGG TAAAAGACTC AAAAATCATT GTTAAACGTA CATCACGTCG TTCATGGTTT
TTTCTTCCTA ATGCAAAACC ATCAGAAATT AACCTAATAA TTAATCTACG TAAAGAGACA
GGTAAGAACA TTCTATCATT TCTATTATTG AATGGTTCTT CAACATTTTC AGACATACAA
AAATCTACAA TTAAAGCACC TGCTACAATT TCACTTACCA TTACTCACTT AGTAGAACTT
GGATTAGTTA GACGCATACC AGGAACTCGT CCAAAATACG AATTAACAGA TAGAGAACTT
ACCTTTGAAT GTATTAAAAA ACTTGAGCCA GATACTTCAG ATAGACTCAA AGAAAGATTT
GCAGACACAT TTTCATATTT GTAA
|
|---|
| Protein sequence | MLSMRQKLTA KVNSETIQKI LESTDQFKTV SEISTECKIP KSTTYRKIKY LQEIGMLEVT
GFITDGGRIN KYKCGKLLRY GKYNPKVKKI LSIITSNPGI CYNELQESSG IPNGTLSHYV
SSMVKDSKII VKRTSRRSWF FLPNAKPSEI NLIINLRKET GKNILSFLLL NGSSTFSDIQ
KSTIKAPATI SLTITHLVEL GLVRRIPGTR PKYELTDREL TFECIKKLEP DTSDRLKERF
ADTFSYL
|
|---|
| |