Gene Nmar_1408 details

Gene Information

• Locus tag: Nmar_1408
• ID: 5773435
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Nitrosopumilus maritimus SCM1
• Kingdom: Archaea
• Replicon accession: NC_010085
• Strand: -
• Start bp: 1288445
• End bp: 1290325
• Gene Length: 1881 bp
• Protein Length: 626 aa
• Translation table: 11
• GC content: 36%
• IMG OID: 641317054
• Product: DNA topoisomerase VI subunit B
• Protein accession: YP_001582742
• Protein GI: 161528916
• COG category: [L] Replication, recombination and repair
• COG ID: [COG1389] DNA topoisomerase VI, subunit B
• TIGRFAM ID: [TIGR01052] DNA topoisomerase VI, B subunit

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 38
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGTCTTCTA TTAAAGAAAA ATTTAATCAG ATTTCTCCTA GTGAGTTTTT CTATAGTAAT 
CGTGATTTGG CTGGGTTCAG TAATCCTACC CGTTCACTAT ACACTGCTGT CAGGGAATTT 
GTTGAAAATG CTCTTGATGC CTGTGATCAA AAAGGAATAC TACCTGATGT ACACTTAACA 
ATTAAGGCTG TTGAGCCCGA CAAACCAGAC CCAAAACCCT ACATCTTGAC TGTAAAGGAT 
AATGGACCTG GAGTTGACGC AAAACACATT CCACTAGCAT TTGGAACTGT CCTTTATGGT 
TCCAAATTTG GATTAAAACA AGCAAGAGGT ATGTTTGGAC TTGGTGCAAC AATGGCAATT 
TTGTATGGTC AGATTACAAC AAACAAACCC GTAATTGTAA AAAGTTGTGC TGATGGACAA 
ACTCAAAACC AGTTTGAAAT ATTATTGGAC ATTCAAAAAA ACAAACCTGT AATTGTAAAA 
CACAATACAA AAGAAGCTTC CAAGAAAGGA CTTTCTGTTA GTATTTGTTT AGAAGGTGAT 
TACTCTAAAG CAGGAAACAA AATTAGAGAT TATGTCTATG AAACATCATT AATTACTCCT 
TATGCAACAA TTACTTTTGA TGATCCTAAA GGACAAAAAT TCCAACACAC TAGATTTGTA 
AAAGAGATTC CTCCTCCACC AACAATTATC AGACCACACC CACATGGAAT TGATGTTGAA 
AGAATCAGAA GAATGATTGT TGAATCTCAA TTTGAAATTC CGACAATTGA TGATGTAATG 
ATTGAAAAGG TAAGAAAAGA TTTAGGATTG TCAAAACAAA ATCTAAGCTT TACTGCAATT 
ATGACCAAAG CAAAAAAGAA ATGGAAAAAT CTTTCACGTC AAGTTCGTGT AGTGATAGCC 
TTGTTGTCAT TTCTGAAAAT GGATTTTGAA AAATTAAGCA AGATTAGAAT TGAAGATTTA 
GATGTTCCAA ACAAAAAATT ACATTATTGG GACTTTGGAG ATTCTCAATC AAAAACAGTT 
GATATGGATC CTGAAAGTCA GTATTACAAA CAACTTACTA ACACTGTTCA AGGTGAACCC 
CTTACTACAT TTCTTACCAA AAGATTCCAA CGTGTAGGTC CTACTACTGC AGTAAAATTC 
GCCGAGTTTG CAAAATTCAA GCCTGAAAAA CGCATGGGTA CTCTGACCAA TCAAGAACTA 
GTGAACCTTA GTGACGCTTT ACAGAAATTC GATGATTTCA TGGCTCCAGA CTCTAGTTGC 
CTTGCACCAT TAGGCGAATC ACCACTAGAA AAAGGAATCA AGAAATTCTT TAATCCTGAT 
TTTGTTGCTG TTGTTCAACG CCCAGCTTCG GCATATTCTG GATTCCCATT TATTGTTGAG 
ATGGGTATTG CATATGGTGG TGACATCAAA TCAGGTGGAC CTCATGTATA CCGATATGCA 
AACAGAATTC CACTACTTTA TGATGAAGGC AGTGATGTAG TTCTAAAAGT TGTAAATGAT 
ACTGACTGGG GACGATACAA AGTAAAAGGT GATCCACCAT TTATCATAGT CTCTCATATT 
TGCTCAACTA GAATCCCTTA CAAGACTGCA GGAAAAGAAA ATGTTGCAGA CAGACAAGAG 
ATCGAACGCG AACTCCGACT AGGATTACAA TTCTTATCAA GAAAACTAGC TGCATTCATG 
TCAAAGAGAG GCCAAGCAGA AATGGCAAAA AAGAGAGCAA ATCTTTATGC AAAATACATT 
CCAATGATCG CAGAATTTTG TACTGAACTT GCCGGAAAGA AAAAAGAACC TAATTACAAG 
AAAATTTTAG AGGAACTAGA ACCTGTTGAA ATTAAAACTG AAAAGACAAT AGAGGAGGAA 
AAACCAATTG AAAGCAAGTG A 

 

Protein sequence

MSSIKEKFNQ ISPSEFFYSN RDLAGFSNPT RSLYTAVREF VENALDACDQ KGILPDVHLT 
IKAVEPDKPD PKPYILTVKD NGPGVDAKHI PLAFGTVLYG SKFGLKQARG MFGLGATMAI 
LYGQITTNKP VIVKSCADGQ TQNQFEILLD IQKNKPVIVK HNTKEASKKG LSVSICLEGD 
YSKAGNKIRD YVYETSLITP YATITFDDPK GQKFQHTRFV KEIPPPPTII RPHPHGIDVE 
RIRRMIVESQ FEIPTIDDVM IEKVRKDLGL SKQNLSFTAI MTKAKKKWKN LSRQVRVVIA 
LLSFLKMDFE KLSKIRIEDL DVPNKKLHYW DFGDSQSKTV DMDPESQYYK QLTNTVQGEP 
LTTFLTKRFQ RVGPTTAVKF AEFAKFKPEK RMGTLTNQEL VNLSDALQKF DDFMAPDSSC 
LAPLGESPLE KGIKKFFNPD FVAVVQRPAS AYSGFPFIVE MGIAYGGDIK SGGPHVYRYA 
NRIPLLYDEG SDVVLKVVND TDWGRYKVKG DPPFIIVSHI CSTRIPYKTA GKENVADRQE 
IERELRLGLQ FLSRKLAAFM SKRGQAEMAK KRANLYAKYI PMIAEFCTEL AGKKKEPNYK 
KILEELEPVE IKTEKTIEEE KPIESK