| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nmar_1316 |
|---|
| Symbol | |
|---|
| ID | 5774046 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrosopumilus maritimus SCM1 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_010085 |
|---|
| Strand | + |
|---|
| Start bp | 1203150 |
|---|
| End bp | 1204304 |
|---|
| Gene Length | 1155 bp |
|---|
| Protein Length | 384 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 36% |
|---|
| IMG OID | 641316960 |
|---|
| Product | major facilitator transporter |
|---|
| Protein accession | YP_001582650 |
|---|
| Protein GI | 161528824 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.0000000106102 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAACAAAG TTCTGATTCT AGTAAACATT ACAGGTCTGA TTATTGGAAT TTCTTATGGA
CTACACGGAC CAATACTTCC AGTCTTTGCA AAAAATGTCA TAGGTGCGAC ATATTCTGAA
CTTGGATTAA TCGGATTAAC AAATTTCATT CCTTACATGT TCATTCCATT GTTTGTCGGA
ATTCTTCTTG ACAGATTCAA TAATGGATAC TTGCTAGCAT TGGGAACTGC AATCAATTCT
GCATCAATTT ACCTTCTATC AATTGCACAA TCAGTACCAG AGATTATGGG ATTTAGAATT
ATGACAGGTG TGGCTCATGC ATTTTTCTGG CCTCCATGTG AATCAATCAT ATCAAATGAA
AGTACAGAGA AAAACAGAGT AAAGAACATC TCGTGGTTTA CAATGTTCTT TGTAATTGGG
TTCATGGTAG GACCACTACT AGGTACCGTA TTTTTGGAGG GTCTTGATAC AACATACAGA
ATCCTATTCC AGATTACTGC ATTCATTTTA GCAACTGCAT TGATTTCATC AATTCTAGTT
TCAAGAAAAA GCGTTAGAAA TCATCATGAA CATTTTTCAT TTTCATCAAT CAAAGAGATG
AAGAGATTTC CTGAAGTCAT AATTTTGTTG CTTTTTTGTA CATCATCATT TGGAATAATT
CTGACAATCT ATCCAGCATT TCTAAATGAC AATGGAATGA CAGACACAGA CATTTTGTTA
TTGTTTTTTG TTTTTGGAAT TTCACGGGTA ATTTCACTTG CACTGGCAGG AAAGTTTGCA
AGAAAAACTA GTCAGACATT GATTGCAGCA GTATTTGCAG TATCAGCTGG ACTGGCAATA
TCAGTTGTAG CAGACTCTAT CATTACTTTT GGAATTGCAC TAGTTCTAAT GGGATTTGGA
TTCAGTATAT TCTTCCCGCT AACTTTGGAG ATTATTCTAA GCAAGACTAA GAAAGGAATT
TCAGGAAAAA TCATAGGAGT ATATGAAACA GTCTTTGGAA TGGGTTGGGC AATAGGGCCA
ACACTTGGTG GACCAATATC ACAATCACTA GGAGATGATA CACCGTATCT GATATTTTGT
GTAATAGGAA TTGGGGTAGC ACTACTTGCA ATCATTACTA GAAAGAAACT AGAGCCACAA
AGAGTCTTGG ATTAG
|
|---|
| Protein sequence | MNKVLILVNI TGLIIGISYG LHGPILPVFA KNVIGATYSE LGLIGLTNFI PYMFIPLFVG
ILLDRFNNGY LLALGTAINS ASIYLLSIAQ SVPEIMGFRI MTGVAHAFFW PPCESIISNE
STEKNRVKNI SWFTMFFVIG FMVGPLLGTV FLEGLDTTYR ILFQITAFIL ATALISSILV
SRKSVRNHHE HFSFSSIKEM KRFPEVIILL LFCTSSFGII LTIYPAFLND NGMTDTDILL
LFFVFGISRV ISLALAGKFA RKTSQTLIAA VFAVSAGLAI SVVADSIITF GIALVLMGFG
FSIFFPLTLE IILSKTKKGI SGKIIGVYET VFGMGWAIGP TLGGPISQSL GDDTPYLIFC
VIGIGVALLA IITRKKLEPQ RVLD
|
|---|
| |