| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nmar_1307 |
|---|
| Symbol | |
|---|
| ID | 5773604 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrosopumilus maritimus SCM1 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_010085 |
|---|
| Strand | + |
|---|
| Start bp | 1195212 |
|---|
| End bp | 1195736 |
|---|
| Gene Length | 525 bp |
|---|
| Protein Length | 174 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 35% |
|---|
| IMG OID | 641316951 |
|---|
| Product | blue (type1) copper domain-containing protein |
|---|
| Protein accession | YP_001582641 |
|---|
| Protein GI | 161528815 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG3794] Plastocyanin |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.00000740367 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAAACGCA GTTCAAAAAC AATGGCCGTA TTAGTTATGA TTTTTGCAGT TTCAATAGTT
TCTCTTTCAA TTAATGTAGC AAGTGCACAA GCAGTACCAG AATGGGTAAA AAATACGGCA
TTGTGGTATG GTGAAGGAAT TGTTTCAGAG GGAGAATTTC TCAATATGAT AAAATTCTTG
ATTGAAAATG AGGTAATTGT AATAGACAAC ATAAAGGAAC CAATGCCTCA AGTATCTGAT
GCACAGATTA TCATTCCAAA TGGAAACTAT GATGTCACAG GTGCAGGATT TTACTCACCA
TTGAATTTAG AGATTCCAGT AGGAACTACA GTAACATGGA CAAATGATGA TTCAGTACCA
CACAACATCC AAAGTATAGA TGTCAATGGA AAGGTCATTC AGTTATTTAA CAGTCCACCA
TTAAATACAG GAGATAGATT TGAGCATGTA TTTGAAGAAG AAGGTGTTTA CAAGTACTAT
TGTTCTTTCC ACCCTTGGAG AGTAGGACTA GTTACAGTAT CATAG
|
|---|
| Protein sequence | MKRSSKTMAV LVMIFAVSIV SLSINVASAQ AVPEWVKNTA LWYGEGIVSE GEFLNMIKFL
IENEVIVIDN IKEPMPQVSD AQIIIPNGNY DVTGAGFYSP LNLEIPVGTT VTWTNDDSVP
HNIQSIDVNG KVIQLFNSPP LNTGDRFEHV FEEEGVYKYY CSFHPWRVGL VTVS
|
|---|
| |