| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nmar_1198 |
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| Symbol | |
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| ID | 5773259 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nitrosopumilus maritimus SCM1 |
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| Kingdom | Archaea |
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| Replicon accession | NC_010085 |
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| Strand | - |
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| Start bp | 1092421 |
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| End bp | 1093617 |
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| Gene Length | 1197 bp |
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| Protein Length | 398 aa |
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| Translation table | 11 |
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| GC content | 30% |
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| IMG OID | 641316842 |
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| Product | tRNA pseudouridine synthase TruD |
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| Protein accession | YP_001582532 |
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| Protein GI | 161528706 |
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| COG category | [S] Function unknown |
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| COG ID | [COG0585] Uncharacterized conserved protein |
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| TIGRFAM ID | [TIGR00094] tRNA pseudouridine synthase, TruD family |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 40 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGATACCTG ATTTAGATTC TAAAATAGGA ATTTCTGTTT ATAGTACAAA ATTTGACGGA
ATTGGGGGAA AAATTCGTAC TACTCCTGAA GACTTTGAAG TCTCTGAAAA AATTTTAGAA
AAAACTCTGA ATTCAATTAA TCAAGAAGAA GGATATGCTG TTTACAAATT AAAAAAGAAA
AGAATTGATA CAAATCATGC ACTATCTGAT ATTTTTAGAA AGAAAGGTCT TAGACTAAAG
TCTCTTGGAT TAAAGGATGC ATCTGCAATC ACTGAACAGT TTGTTTGTTC TGGAAATAAA
GGTAAATCAA TTGAAGATTA TTCAACTGAA AAATATTCTT TGAAAAAAAT TGGCTTTGTA
AAAAAACCTC TTTCAAAAAA AGATATGATT GGGAATCATT TTAAAATCAA AATCTCTGAT
TGTACCAATA AACTATCTTC ATTTGAAGAG TTTAACAATG TCTTGAATTT CTATGGGTAT
CAAAGATTTG GCTCAAAGAG GCCTGTAACT CATTTGATAG GTAAAGCAAT ACTTCAAAGA
GATTTTGATA AAGCAGTTGA ACTTGTTTTG TCTTTTACTT CTGATTATGA TTCAAAAGAA
AATAATGAAA TTCGACAAAA ACTTGTTGAT AAACAAAACT ACAATCAATA TTTTGAGAAA
ATACCAAAAC AAATGGATAT TGAAAGAATT GTCCTAAAAG AAATGATTGA ACATGATGAT
GCATTTCGTG CAATACGTGC AATTCCCGTA TCTTTGAGAA GATTTTACAT TCAGGCATAC
CAGTCGTTTA TTTTCAATAA ATCTCTGAGT ACTGCATTTA CTGATGGTGA AAATATGTTT
GAATCTGAAT CTGGTGATGT TTGTTTTGAT TTTAATGGAA TCATTGGAAA ATTTGTAAAG
GGATTAGATC AAAAATTGGC TATACCTTTT GTTGGATATT CATATTACAA AAAAACAAGA
TTTGATTATC ATATATCACA AATAATGCAG CAAGAAGAAA TAACTCCCAA AGACTTCTTT
ATCAAAGAGA TGCAAGAAGT AAGCAGTGAG GGAGGATTTC GACAAGCTGC AATAGATTGT
TCTGATTACT CGTCTCGTGA TGATGTTGTA GAATTTACTT TGTCAAGGGG ATCTTTTGCA
ACAATTTTGT TGAGAGAGAT TATGAAACCA TCTGATCCTA TTTATGCTGG TTTTTGA
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| Protein sequence | MIPDLDSKIG ISVYSTKFDG IGGKIRTTPE DFEVSEKILE KTLNSINQEE GYAVYKLKKK
RIDTNHALSD IFRKKGLRLK SLGLKDASAI TEQFVCSGNK GKSIEDYSTE KYSLKKIGFV
KKPLSKKDMI GNHFKIKISD CTNKLSSFEE FNNVLNFYGY QRFGSKRPVT HLIGKAILQR
DFDKAVELVL SFTSDYDSKE NNEIRQKLVD KQNYNQYFEK IPKQMDIERI VLKEMIEHDD
AFRAIRAIPV SLRRFYIQAY QSFIFNKSLS TAFTDGENMF ESESGDVCFD FNGIIGKFVK
GLDQKLAIPF VGYSYYKKTR FDYHISQIMQ QEEITPKDFF IKEMQEVSSE GGFRQAAIDC
SDYSSRDDVV EFTLSRGSFA TILLREIMKP SDPIYAGF
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