| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nmar_0944 |
|---|
| Symbol | |
|---|
| ID | 5773424 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrosopumilus maritimus SCM1 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_010085 |
|---|
| Strand | - |
|---|
| Start bp | 821861 |
|---|
| End bp | 823369 |
|---|
| Gene Length | 1509 bp |
|---|
| Protein Length | 502 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 34% |
|---|
| IMG OID | 641316583 |
|---|
| Product | DEAD/DEAH box helicase domain-containing protein |
|---|
| Protein accession | YP_001582278 |
|---|
| Protein GI | 161528452 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1111] ERCC4-like helicases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 0.219014 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGACTGAAT TTATTGAAAA AAGATATGTC AAAAAAGACT CTATTGAAAA GCGAGATTAC
CAAGTAAACC TTGCAAATCA GGCTATCTCT GAAAATTGTA TTGTAGTTTT GCCAACTGGT
CTTGGAAAAA CTGCAATTGC ATTACAAGTT ATTGCGGAAT ATCTCTCCAA AGGTACTGGC
GGTGCATTGT TTTTAGCACC TACAAGAGTA CTTGTAAACC AACATTATGA ATTTCTAAAA
GAGAATCTAA CATTAGATGA CATTTCTCTA ATAACTGGTG AGGATACTAT TCAAAAAAGA
ACCAAACTTT GGAATAACAG TGTAATTTGC GCCACTCCTG AAATTGCAAA AAATGATTTG
GATAGGGGAA TTGTTTCGTC TAACCAATTT AATCTCATAA TATTTGATGA AGTACATAGA
ACAGTTGGAG ATTATGCATA TTCTGGAATC GCAGAACGTT TTGTTAATTC TGATGGAAGA
ATTGTTGGAA TGACTGCAAC ATTGCCTAGT GAAAAAGACA AGGCAACTGA AATTTTAACT
AAATTAAAAA TTGCAAGTGT TGCTGAAAGA ACAGAAAATA GTCCTGATGT CAAACCATAT
ACTCAGGAGA CCAACACTGA ATGGATAAAT GTTGAACTCC CACCAGAACT AAAAACAATT
CAAACATTAT TGAAATTAGC CCTTGATCAA AGATATCAAA CATTACGTGA TAATGGAATC
AAACTAGCTG AACAACAATC ACTTTCTGCT CTATTAAGAA TTAGACAATT TGTATTAAAT
CAGAATAGAC GTTCTGCAAA ACCACTATTC ACTGCAATTA GAATTCACTA TGCACTAAAC
ATCTTAGAGG CACATGGAAT TACGCCGTTT TTGAAGTTCT GTGAGCGTGC CAAGGCAAAA
AAAGGTGCAG GAGTAAAGGA ACTCTTTGAG GTTGACCCAA ATTTTACTCG TGCAGTACAT
CTTGCAAAAG AAGCTCAATC TAGGGGAATT GAACATTCTA AGATTCCTAA ACTAAAAGAT
ATCATAGAAT CTGTACCTGG AAAGGCTTTG ATTTTTACAA GCTATCGTGA TTCTGTTGAT
TTAATTCATA GTAAATTGAC TGAACTTGGA GTTTCTGCGG GAATTCTGAT TGGTAAAGCA
GGTGAAACCG GCCTAAAACA AAAAAAGCAA ATTGAAATTG TACAAAAGTT TCGTGATGGT
ATCTTTGATG TTTTAATTGC AACTCGTGTT GGTGAAGAAG GGTTGGATAT TGCTGAAGTA
AACCAAGTTA TCTTTTATGA TAATGTTCCT AGCTCTGTTA GATTTATTCA AAGACGAGGT
AGAACTGGAA GAAAAGATAC TGGAAAACTA GTTGTTCTAA TTGCAAAAAA TACTATTGAT
GAGACATACT ATTGGATTGG TAAACGAAAA ATGTCTGCAT CAAAAGCAAT GGGTGATAAA
ATGACTAAGG TATTGGAAAA AAATCAAGAA GTTGTTTCTA AAAAGACAGG ATTAGATGCG
TTTATCTAA
|
|---|
| Protein sequence | MTEFIEKRYV KKDSIEKRDY QVNLANQAIS ENCIVVLPTG LGKTAIALQV IAEYLSKGTG
GALFLAPTRV LVNQHYEFLK ENLTLDDISL ITGEDTIQKR TKLWNNSVIC ATPEIAKNDL
DRGIVSSNQF NLIIFDEVHR TVGDYAYSGI AERFVNSDGR IVGMTATLPS EKDKATEILT
KLKIASVAER TENSPDVKPY TQETNTEWIN VELPPELKTI QTLLKLALDQ RYQTLRDNGI
KLAEQQSLSA LLRIRQFVLN QNRRSAKPLF TAIRIHYALN ILEAHGITPF LKFCERAKAK
KGAGVKELFE VDPNFTRAVH LAKEAQSRGI EHSKIPKLKD IIESVPGKAL IFTSYRDSVD
LIHSKLTELG VSAGILIGKA GETGLKQKKQ IEIVQKFRDG IFDVLIATRV GEEGLDIAEV
NQVIFYDNVP SSVRFIQRRG RTGRKDTGKL VVLIAKNTID ETYYWIGKRK MSASKAMGDK
MTKVLEKNQE VVSKKTGLDA FI
|
|---|
| |