| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nmar_0593 |
|---|
| Symbol | |
|---|
| ID | 5773624 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrosopumilus maritimus SCM1 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_010085 |
|---|
| Strand | - |
|---|
| Start bp | 529423 |
|---|
| End bp | 530595 |
|---|
| Gene Length | 1173 bp |
|---|
| Protein Length | 390 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 32% |
|---|
| IMG OID | 641316227 |
|---|
| Product | radical SAM domain-containing protein |
|---|
| Protein accession | YP_001581927 |
|---|
| Protein GI | 161528101 |
|---|
| COG category | [H] Coenzyme transport and metabolism
[R] General function prediction only |
|---|
| COG ID | [COG1060] Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes |
|---|
| TIGRFAM ID | [TIGR03550] 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 41 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGTTGAGCA AACTTGTATT AAATTCTGAG AGTTTAAACA ATGTTTTAGA CAATAAAGAA
ATCTCTCGTC ACAGTATTTT AGAAATTTAT CATAATGCAA TAAAAAACCC AAATGAACTT
TTTTCAACAG CACAAGTTCT AAGAAAAAAA CACAAAGGGA ATTCTGTAAC ATTTTCAAAA
AAAGCATTCT TCAACATTGT TAATCTCTGT AAAGACAGTT GTTCATACTG TACATACAAA
GCAGAGCCCG GAGAAGAGAA ACTATCATTA ATGTCAAAAC AACAAATTAC AGAATTACTA
GATCTTGCAA AAAAATACAG ATGTGTTGAA GCATTGTTTG TAACAGGGGA ACAACCAGAA
CAAAGATACC AAGAAGCAAA AGACTGGCTA AAAGAAAATG GATTCACATC TACATCAGAA
TATCTAATTC ATGCATCAGA AATTGCATTA GAAAAAGGAC TTTTCCCGCA CACAAATGCA
GGAAATTTGA ATTTTGAAGA GATGAAAGAA CTAAAGAAAA CAAATGTTTC AATGGGCCTA
ATGCTTGAAA ACATTAGTGA AAGATTAACA GAAAAAGGAA TGCCACATTA TTTGGCAGCT
AGTAAAAGAC CAAAAGCAAG ATTAGAAATT TTAGAAAACT CTGGAAAATT ACAAATTCCA
ATGACTACAG GAATTCTTGT AGGAATAGGA GAAACAATAG AAGAAATCAT TGATTCATTA
TTAACAATCA AAGAGTTACA CCAGAAATAT GGAAACATTC AAGAGGTAAT TTTACAAAAT
TTCCAACCAA AACAAGACAC AAGAATGAAA GATGAACCAT CTGCAGATGA AAAATATTTC
AAAACAATTG TTGCCCTATC TAGAATAATT ATGCCAGAGA TGAACATACA GATTCCACCA
AATCTATCTC CAAAGTCTTA TCAGAGTTTT TTGTCTGTAG GAATTAATGA TTGGGGAGGA
ATTTCACCTT TGACTCCTGA TTTTGTGAAC CCCGAATTTT CTTGGCCAGA AATTAACAAA
GTCGATGAAA ATTCAAAAAG TGCAGGATTT GATTTGAAAT GCAGATTCCC AATATACCCG
GAATTCTTTT CTTTTATTAG TAAAGAACTA CAAGAGAAGA TGAAAGAGAT TCAAAATGAG
GAAGGGTTGG TAAAAGAGGA GTATTGGAGA TGA
|
|---|
| Protein sequence | MLSKLVLNSE SLNNVLDNKE ISRHSILEIY HNAIKNPNEL FSTAQVLRKK HKGNSVTFSK
KAFFNIVNLC KDSCSYCTYK AEPGEEKLSL MSKQQITELL DLAKKYRCVE ALFVTGEQPE
QRYQEAKDWL KENGFTSTSE YLIHASEIAL EKGLFPHTNA GNLNFEEMKE LKKTNVSMGL
MLENISERLT EKGMPHYLAA SKRPKARLEI LENSGKLQIP MTTGILVGIG ETIEEIIDSL
LTIKELHQKY GNIQEVILQN FQPKQDTRMK DEPSADEKYF KTIVALSRII MPEMNIQIPP
NLSPKSYQSF LSVGINDWGG ISPLTPDFVN PEFSWPEINK VDENSKSAGF DLKCRFPIYP
EFFSFISKEL QEKMKEIQNE EGLVKEEYWR
|
|---|
| |