| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nmar_0556 |
|---|
| Symbol | |
|---|
| ID | 5774661 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrosopumilus maritimus SCM1 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_010085 |
|---|
| Strand | + |
|---|
| Start bp | 496619 |
|---|
| End bp | 499099 |
|---|
| Gene Length | 2481 bp |
|---|
| Protein Length | 826 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 37% |
|---|
| IMG OID | 641316189 |
|---|
| Product | histidine kinase |
|---|
| Protein accession | YP_001581890 |
|---|
| Protein GI | 161528064 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
|---|
| TIGRFAM ID | [TIGR02205] cell division protein ZipA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 0.241536 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAATA TTGTCTTTCT GAGTTTTTTG ATATTTTTTG TAATGTCTTT TACTCTTGTT
GATGTATATG GGCAATCTGA TAATGAACAA TCTTCTGAAA TAGTTAGCTG TACTGAAGGT
TATGAACTAG TTTCCAAACC TTCTGGTGAT TCTTCGATAT GTGTGAAATC CTCAAGTCTT
GAGAATTTTC TTGATAGAGG ATACACACTT GCTACTTCAA CACAAGAGAA TCTACGTGTT
GGATTGTTAT TTTCAACCTC TGGTGATGCC TCAACATATG GACTTGAAAG TCAACATGCT
GCACTAATTG CTATTGATGA TTTCAATGAA TATTTGAAAT ACATTGAAAA TGAGCAAATA
ATCTTAGTTC CTGAGATAGT TTCTCTCAAA ATTGATCCTG AACATACTCT GGAACAAGTA
AAAAGAATGC ATCTTGATGG AGTAGATGTT TTCATTGGAC CTGACACAAG TGCAGAACTT
GAATTTATGA AATCTTATGT TGATTCTGAG GGATTATTGG TTATTAGCAC ATCTTCAACT
GCACCATCTT TGGCAATCGA AGATAATATT TTCCGACTTG TTCCTGATGA CACACATCAG
ACTCGATTAC TTGCCCTTCT TGCAGAATCT GCCGGCAGTC CTACTGTGTT TCTTTTAGTT
CGTGATGATA CATGGGGTAA TGATTTTGCA AGTGCAATTG AAGAATATTA TTCAGGAAAT
GTTTCTATAA TACATTATGA TCCTGTGTCT CCTCTCTATG AACAAACTTT ACAACAATTA
TCTGAATCAA TTACCGCAGA GATAACTGCC TCAGAAATAA CTACCTCCGA TTTTAGAGTT
GGTATGATTG GCTTTGGTGA ATCTGCTGAA TTTTTATCTC GCGCAACTCA ATTTGATATA
CTTGATGATG TGATATGGTT TGGAACTGAT TTTACTGCAA ATGAGAAAAA AATAACTGAA
AATGAAAAAG CCGTTGAATT TGCACAAAAT GTTTCATTTA AAGCGCTTCA GTTTTCAGCT
GATATTGAAA GTACTGCTTA TCAAGAAATT GAAACAAAAC TTTTTGGAAA ATTAGGATAC
TTACCAGACA TTTATGCATT TACTGCATAT GATGCTGTAT GGATATTGGG CTTGAGTATG
TTAGATGCAG CAAGCACTAA TCCAAATGAT TTAGCATTAG AAATTCCATC TACTATCACT
TCTTACAATG GCGCTCTGGG AAATTTGGAA TTAAACGACG CTGGTGATTT AGTCTCTGAT
AATTATGCTG TTTGGTCTAT TGTGGATGGT GCTTGGTACA AAGGCAATTA TGCAAAAAAT
ATGGAATCTG GGATAATAGA ACTTGTTGAA ACTGATTTAG AAGAATTGGC TACTGACGAA
ACTATTTTGG AAAAATCCGC CCCTCCTGCA GATGATGAGA TTCCTATAGC ACAACCTTCT
ACTATAGATG ATGAGATTCC TATAACACAA CCATCTACTG CATATGACGA ACAATCTATT
CTTGTAAACT TGTTAATTGC ATTGATTATT GTGGTATCTG CAATTGCGGG ATTTGCCATT
TGGAAACTTC GAACTCTATC AATAAAGTTG AAGAACTTTA TTCATACGCA AAAAATTGAA
CCAACACCAG AACCCGAACC AACACCAGAA CCTGAACCAA CACCAGAACC TGAACCAACA
CCAGAACCTG AACCAACACC AGAACCTGAA CCAACACCAG AACCTGAACC AACACCAGAA
CCTGAACCAA CACCAGAACC TGAACCAACA CCAGAACCTG AACCAACACC AGAACCTGAA
CCAACACCAG AACCTGAACC AACACCAGAA CCTGAACCAA CACCAGAACC TGAACCAACA
CCAGAACCTG AACCAACACC AGAACCTGAA CCAACACCAG AACCTGAACC AACACCAGAA
CCTGAACCAA CACCAGAACC TGAACCAACA CCAGAACCTG AACCAACACC AGAACCTGAA
CCAACACCAG AACCTGAACC AACACCAGAA CCTGAACCAA CACCAGAACC TGAACCAGTT
GAACCCAAAG ACTCTGTTAG ACTACTGTCT TCTAAGGAAA TTCTCCAAAA ATGTATTCAA
ACACATTCAT CACTTATGAC TGATAAAGAA ATTGATTTTT CAGATTCATC AATCAAAAAT
GTGAAGTTTG TATCTAATGA AAAACCAATT TTAGAAATTT TTTCAAATTT AATTCGTGCT
TCTCATCATT TGGTTGGCTC TTATGGTCAA ATTGAGATTG GTGTAAATGA TGATGAGGAC
ATTACATTTT TTGTTAAAGA TAACGGAAAT GGAATTTCAA AAGAAGAACA AGAGAAAGTT
TTTGAGCAAA ATGATGGTCC TTTAGGATTG ATGGGAACCA AAGAACTAGT TCAAGATATG
GGTGGTAAAA TTTGGATTGA AAGTGTTTCT TTCCTAGGAA CTACTTTTTA TTTTTCAATC
CCAGTACATC CTAACTCTTA A
|
|---|
| Protein sequence | MKNIVFLSFL IFFVMSFTLV DVYGQSDNEQ SSEIVSCTEG YELVSKPSGD SSICVKSSSL
ENFLDRGYTL ATSTQENLRV GLLFSTSGDA STYGLESQHA ALIAIDDFNE YLKYIENEQI
ILVPEIVSLK IDPEHTLEQV KRMHLDGVDV FIGPDTSAEL EFMKSYVDSE GLLVISTSST
APSLAIEDNI FRLVPDDTHQ TRLLALLAES AGSPTVFLLV RDDTWGNDFA SAIEEYYSGN
VSIIHYDPVS PLYEQTLQQL SESITAEITA SEITTSDFRV GMIGFGESAE FLSRATQFDI
LDDVIWFGTD FTANEKKITE NEKAVEFAQN VSFKALQFSA DIESTAYQEI ETKLFGKLGY
LPDIYAFTAY DAVWILGLSM LDAASTNPND LALEIPSTIT SYNGALGNLE LNDAGDLVSD
NYAVWSIVDG AWYKGNYAKN MESGIIELVE TDLEELATDE TILEKSAPPA DDEIPIAQPS
TIDDEIPITQ PSTAYDEQSI LVNLLIALII VVSAIAGFAI WKLRTLSIKL KNFIHTQKIE
PTPEPEPTPE PEPTPEPEPT PEPEPTPEPE PTPEPEPTPE PEPTPEPEPT PEPEPTPEPE
PTPEPEPTPE PEPTPEPEPT PEPEPTPEPE PTPEPEPTPE PEPTPEPEPT PEPEPTPEPE
PTPEPEPTPE PEPTPEPEPV EPKDSVRLLS SKEILQKCIQ THSSLMTDKE IDFSDSSIKN
VKFVSNEKPI LEIFSNLIRA SHHLVGSYGQ IEIGVNDDED ITFFVKDNGN GISKEEQEKV
FEQNDGPLGL MGTKELVQDM GGKIWIESVS FLGTTFYFSI PVHPNS
|
|---|
| |