| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nmar_0549 |
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| Symbol | |
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| ID | 5774501 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nitrosopumilus maritimus SCM1 |
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| Kingdom | Archaea |
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| Replicon accession | NC_010085 |
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| Strand | - |
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| Start bp | 489568 |
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| End bp | 490422 |
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| Gene Length | 855 bp |
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| Protein Length | 284 aa |
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| Translation table | 11 |
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| GC content | 34% |
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| IMG OID | 641316182 |
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| Product | shikimate kinase |
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| Protein accession | YP_001581883 |
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| Protein GI | 161528057 |
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| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
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| COG ID | [COG1685] Archaeal shikimate kinase |
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| TIGRFAM ID | [TIGR01920] shikimate kinase |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCAAAAG CAAAAGCAAC GGTTCATGGT GCAGTTTCAA TAGTAAATGC AATCGCAAAT
CAAAAAGGGG CAACTCTAGG AATAGACCTA AAGGTTGAAG CCATAGTAGA GACAACTCCG
GGAAAAGGCA TAGTAATTCA ATCAGAAAAC AAAACACTCA GTTCTAGATT AATCAACAAA
ACAGTTGAAA AAATTGTTTC AAAAAAAGAC CTTGAGAAAA ACAAAATAAC CATCACATTA
GATTCAGAAA TTCCTACAGG ATATGGATTG AAGAGTTCTA GTGCAATATC TTCTGCAGTC
GCATTGGGAT GTGCAAAAAT TTTCAAATCT AAATTCACTG ATCAACAAAT TCTACTTGCA
GGAGTTGATG CATCAATAGA ATCCAAAGTA AGTATTACTG GAGCATATGA TGATGCATGC
TCATGCTATT ATGGTGGATT TAATGTGACA GATAATGCAA AAAAGAAAAG AATGAGTTTT
GAAAAAGGCC CTTCAAATTT GATTGCAGTG ATATTTATTC CAAAAAATAG AAAACGCGGA
AATCTAAAAA AACTCAAAGT GTTATCATCA GTTTTTGATC ATGCTTGGGA TTTAGCAAAG
AAAGCAAACT ATTGGGAAGC AATGATAATT AACGGATTGG CTACAGCATC AATTCTTAGC
TCAAATCCAG ATGTGATAAC AGGATTAATT GAACGAGGAG CTTTAGGAGC ATCGGTTTCA
GGAAACGGTC CAGCAATTGC AGCAATTACA AAGAAAGAAA ATGAATCCAA TATCAAAAAA
GCATTTTCGT CATTAGAAGG AAAAATTATA GTTGCAAAAG TCAGTAACAA AAAGGCTGAA
GTACATGAAG TGTAA
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| Protein sequence | MAKAKATVHG AVSIVNAIAN QKGATLGIDL KVEAIVETTP GKGIVIQSEN KTLSSRLINK
TVEKIVSKKD LEKNKITITL DSEIPTGYGL KSSSAISSAV ALGCAKIFKS KFTDQQILLA
GVDASIESKV SITGAYDDAC SCYYGGFNVT DNAKKKRMSF EKGPSNLIAV IFIPKNRKRG
NLKKLKVLSS VFDHAWDLAK KANYWEAMII NGLATASILS SNPDVITGLI ERGALGASVS
GNGPAIAAIT KKENESNIKK AFSSLEGKII VAKVSNKKAE VHEV
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