| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nmar_0463 |
|---|
| Symbol | |
|---|
| ID | 5773253 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrosopumilus maritimus SCM1 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_010085 |
|---|
| Strand | + |
|---|
| Start bp | 416242 |
|---|
| End bp | 417243 |
|---|
| Gene Length | 1002 bp |
|---|
| Protein Length | 333 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 33% |
|---|
| IMG OID | 641316094 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001581797 |
|---|
| Protein GI | 161527971 |
|---|
| COG category | [E] Amino acid transport and metabolism
[G] Carbohydrate transport and metabolism
[R] General function prediction only |
|---|
| COG ID | [COG0697] Permeases of the drug/metabolite transporter (DMT) superfamily |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.000101678 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGTGG TATCTAAATT CCAGCCCACC TATGAAAACT TAAGAAAATC AAAAATCAAT
AAAATTTCCC TATTTTCAAA ATTAAAAAGT AAAACCGTCG GTGTGGGTTT TTTATTTGCT
ATTTTAGCTG CTGCATTTTC GGCATTACCT AATGTTATAC CAAAGTCATT TTTGGATGCA
CATGCTGTAG ATACTTCAAC AATTCCAAAT CCCCTGATGT TGGTTTTTGT GATTTATGTT
GTAAACAGTT TACTGTTTTC TCCATTTCGT AAGTCTCAAA GAGAACATGA AGTAAAAAAA
ACAAGTCGAA TGACTTTGTT TTTGTTAATA TTGCTTGGAG CAGTAGAGGC CTCAGGAACA
TTAACTTATA CATTTGGACT CCAAGAAACT AGTGCAACAA ATGCTTCTAT CTTAGTAAAT
TCTGAAACTG TTTTTGCCAT TTTACTAGGC ATTATGATCT TTAGAGAAAA ATTAAGTAAA
CAAGAAGTTT TGCCATTTTT CCTAATTGTT GCAGGTTCAA TCTTGATTCC CGTTGGTGCT
GATATTCAAA ACAACGAATG GGAATTGTCT GATTTCATGA TGGGTGATTT ACTTATTGTT
ATGTCTGGAT TTTTTTACTG TCTTGACACC TTTATTGCCA AAAAACTAGA TGATTCCATC
AAAACTCGTC ATATAGTCCA CATTATGTCC TGCACTGGTG CAATAATGAC TTTGGGATTA
ATGTTGTTCT TTGAAATCCC ATTTGATATT TCGTTTGAGG AATTATCTGT AATGTCTTTT
GTTGGATTTT TGGGAATTGG TGTTACTATG ATGTTTTTTG TCATTGCATT AAGATTAATT
GGTGCTGTAA GGACTGTTCT AATTTACTCA TCTACGACTA TATTTAGCAT AGTCTATTCA
ATTTTGATTT TATCTGAAGG GCTTACAATT TTGAATATTG TATCTACATC TAGCGTGCTA
ATTGGGTTGT TTGTTCTTCG TAATAGGGTG GGGTCTGATT AA
|
|---|
| Protein sequence | MSVVSKFQPT YENLRKSKIN KISLFSKLKS KTVGVGFLFA ILAAAFSALP NVIPKSFLDA
HAVDTSTIPN PLMLVFVIYV VNSLLFSPFR KSQREHEVKK TSRMTLFLLI LLGAVEASGT
LTYTFGLQET SATNASILVN SETVFAILLG IMIFREKLSK QEVLPFFLIV AGSILIPVGA
DIQNNEWELS DFMMGDLLIV MSGFFYCLDT FIAKKLDDSI KTRHIVHIMS CTGAIMTLGL
MLFFEIPFDI SFEELSVMSF VGFLGIGVTM MFFVIALRLI GAVRTVLIYS STTIFSIVYS
ILILSEGLTI LNIVSTSSVL IGLFVLRNRV GSD
|
|---|
| |