| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nmar_0431 |
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| Symbol | |
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| ID | 5773087 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nitrosopumilus maritimus SCM1 |
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| Kingdom | Archaea |
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| Replicon accession | NC_010085 |
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| Strand | + |
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| Start bp | 384228 |
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| End bp | 384908 |
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| Gene Length | 681 bp |
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| Protein Length | 226 aa |
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| Translation table | 11 |
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| GC content | 37% |
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| IMG OID | 641316061 |
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| Product | exosome complex RNA-binding protein Rrp4 |
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| Protein accession | YP_001581765 |
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| Protein GI | 161527939 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1097] RNA-binding protein Rrp4 and related proteins (contain S1 domain and KH domain) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 0.0115724 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCAGATA AGAGAAAATA CGTTATCCCA GGTGATGTTG TAACCACAGG ACCTTTCAGA
CCTGAACAAA ACACAGTACT TGAAGGAAAT AAAATAATCT CAACAACAAT TGGTATTTCT
GAAATTTATG ATGACTCTGT TCGTGTAATT CCACTAACTG GAAAATATAT TCCAAAAATT
AATGATCTTG TAATTGGCAA AGTCAACTCC CACACATCCT TGTCTTGGGA ATTGGATATC
AATTCATGCT ATGTTGGATT TTTGCCAGCA CAAGATGTTT TTGGACGTGA CTTTTCTGCT
CATGCTGATG AACTTGCAAC CAAACTCCGA ACAGGAGATC TAGTTGCTGC AAGAATTGCA
AACTTTGATA GAACAAGAGA TCCATTAGTC TCCATCTCTG ATAGAGACTT GGGAAAGATT
GATTCTGGCG TTCTTATGGA AATATCTCCA AGCAAAGTTC CACGCCTAAT TGGAAAGAAA
GGTAGTATGA TTCAGATGAT TGAAGAGGCT ACTGATGCTG CAGTAACAAT TGGACAAAAC
GGTTGGGTTG TAGTTTCCTG TGAATCCCCA GAGGGATTAT TAAAGGCTAA AAAAGCAATT
CAAATGGTTA ATGAGCAAGC ACACGTTGCA AATTTGACTG ATCAAGTGAA AGAAATGTTA
GATAAAAAAG GTGAATCATA A
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| Protein sequence | MADKRKYVIP GDVVTTGPFR PEQNTVLEGN KIISTTIGIS EIYDDSVRVI PLTGKYIPKI
NDLVIGKVNS HTSLSWELDI NSCYVGFLPA QDVFGRDFSA HADELATKLR TGDLVAARIA
NFDRTRDPLV SISDRDLGKI DSGVLMEISP SKVPRLIGKK GSMIQMIEEA TDAAVTIGQN
GWVVVSCESP EGLLKAKKAI QMVNEQAHVA NLTDQVKEML DKKGES
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