| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nmar_0396 |
|---|
| Symbol | |
|---|
| ID | 5773528 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrosopumilus maritimus SCM1 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_010085 |
|---|
| Strand | + |
|---|
| Start bp | 357095 |
|---|
| End bp | 358636 |
|---|
| Gene Length | 1542 bp |
|---|
| Protein Length | 513 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 38% |
|---|
| IMG OID | 641316025 |
|---|
| Product | signal recognition particle-docking protein FtsY |
|---|
| Protein accession | YP_001581730 |
|---|
| Protein GI | 161527904 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0552] Signal recognition particle GTPase |
|---|
| TIGRFAM ID | [TIGR00064] signal recognition particle-docking protein FtsY |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 0.0574557 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTTGATA AACTTCGTAG TGCATTTTCT AATGCAGCGA AAAGTTTTGG TGAAAAAGAA
CTTAATGAAA AAGACATAGA AGACATTCTC TTTGAATTAG AAATTTCTCT TTTAGAATCT
GATGTTGCAA CTGAAGTAAT TGATTCAATC AAAGATGATC TTAAAGAAAA ACTGGTCGGC
TCCAAAGTTG ACAAAAAAGA GATAGAAAAA TTTGTTAAAG ACAGTTTGAT TTCTAGTATT
TCTGCACATT TTGATGCAGC TGGAGAAATT GATCTATTTG GAAAAATTAA TGAAAAAAAG
GAACAAGGTC AACCATTTCT GATTTTATTC CTTGGAATTA ATGGAACTGG AAAGACAACA
TCACTAGCTA AAGTTGCACA CATGTTACAA CAAGAAAAAT ATTCTGTTGT TGTTGCAGCT
GCTGATACAT TTAGAGCTGG TGCAATTGAA CAATTACGAG AACACACTAA TCGACTTAAT
CTAAAACTTG TTGCACAAAA TTACAATTCT GATCCTGCAG CTGTTGCACG TGATGCAGTA
CTGTATGCAA AATCTCACAA AACAGATGTT GTTTTGATTG ACACTGCGGG AAGAATGCAA
ACAAGTGAAA ACTTGATGCA ACAAATTGAA AAAATTACCA AAGTTGTAAA TCCTGATCTA
AAAATTTTTG TTGGTGATTC TTTGGCAGGA AATGATACTG TCAATCAAGC TCGTGAATTT
CATGCGCATA CAAACTTCCA TGGTTCAATT CTTACCAAGA GTGATGCAGA TGCAAGAGGA
GGTGCTGCTC TATCTATTGT TAAAGTCACT TCAACCCCTG TGATGTATGT TGGAGTTGGA
CAGGAATATC CTGATTTGAA ACCCTTTGAT AAGAAAACTT TTCTTGAAAC TGTTTTTGGA
AATCTGGATA ACGTCGATAT CAAGAAAGAA CCAACACCAG AACCAACACC AGAACCAACA
CCAGAACCAA CACCAGAACC AACACCAGAA CCAACACCAG AACCAACACC AGAACCAACA
CCAGAACCAA CACCAGAACC AACACCAGAA CCAACACCAG AACCAACACC AGAACCAACA
CCAGAACCAA CACCAGAACC AACACCAGAA CCAACACCAG AACCAACACC AGAACCAACA
CCAGAACCAA CACCAGAACC AACACCAGAA CCAACACCAG AACCAACACC AGAACCAACA
CCAGAACCAA CACCAGAACC AACACCAGAA CCAACACCAG AACCAACACC AGAACCAGAA
CCAACTTCTG ATGATCCGTT TGAAGGAATC AAAGATGATG AGATTGCAAC TTATTCAGAT
TTGTTTGATG TTCCTCCACC AGAAAACGAT GATGAGGCTT TCAAACTAGG CAAAAAAATT
CGTCAATGGA TTAAAGATGG GAAACCTGAA CCAGGGGACG AAGATGAAGA AGATGAAGAT
GAGTATGAAG ATGATGAGGA TGAAGATGAA GAAGAGATTC AAAAACATGA TAAAGAAGAA
CCAAAAAAGA AAAAAGGTAG GTTCGGGTTC TTTAGAAGAT GA
|
|---|
| Protein sequence | MFDKLRSAFS NAAKSFGEKE LNEKDIEDIL FELEISLLES DVATEVIDSI KDDLKEKLVG
SKVDKKEIEK FVKDSLISSI SAHFDAAGEI DLFGKINEKK EQGQPFLILF LGINGTGKTT
SLAKVAHMLQ QEKYSVVVAA ADTFRAGAIE QLREHTNRLN LKLVAQNYNS DPAAVARDAV
LYAKSHKTDV VLIDTAGRMQ TSENLMQQIE KITKVVNPDL KIFVGDSLAG NDTVNQAREF
HAHTNFHGSI LTKSDADARG GAALSIVKVT STPVMYVGVG QEYPDLKPFD KKTFLETVFG
NLDNVDIKKE PTPEPTPEPT PEPTPEPTPE PTPEPTPEPT PEPTPEPTPE PTPEPTPEPT
PEPTPEPTPE PTPEPTPEPT PEPTPEPTPE PTPEPTPEPT PEPTPEPTPE PTPEPTPEPE
PTSDDPFEGI KDDEIATYSD LFDVPPPEND DEAFKLGKKI RQWIKDGKPE PGDEDEEDED
EYEDDEDEDE EEIQKHDKEE PKKKKGRFGF FRR
|
|---|
| |