| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nmar_0368 |
|---|
| Symbol | alaS |
|---|
| ID | 5772953 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrosopumilus maritimus SCM1 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_010085 |
|---|
| Strand | - |
|---|
| Start bp | 333646 |
|---|
| End bp | 336315 |
|---|
| Gene Length | 2670 bp |
|---|
| Protein Length | 889 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 36% |
|---|
| IMG OID | 641315997 |
|---|
| Product | alanyl-tRNA synthetase |
|---|
| Protein accession | YP_001581702 |
|---|
| Protein GI | 161527876 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0013] Alanyl-tRNA synthetase |
|---|
| TIGRFAM ID | [TIGR00344] alanine--tRNA ligase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 43 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGGACAAAA AAGAGATTCT AAAAGAATTT TCAGCAGATC CTGACAAATA TTATAATGTC
AAACTATTCC AAGAACAGGG ATTTATCAGA AAGTCTTGTG CCAAATGTGG CAGATTTTTT
TGGACTCTAA ATGCAGACAG AGACTTGTGT CCTGATGACG GATTGGATAC TTATTCATTC
ATCGGAGAAC CACCAACTTC AAAGCGATTT GATTATACAC AATCATGGAA ACAAGTTGAA
GAGTTTTTTG TAAAAAATAA TCACACTTCA GTTAGCAGGT ATCCTGTTGT TTGTCGTTGG
CGTGATGACT TGTACTTTAC AATTGCATCA GTTGTTGATT TTCAAAGAGT AATGGGAAGC
AAAGTTGTCT TTGAGTTTCC TGCAAATCCT TTGGTAGTAC CACAGACATG TTTAAGATTC
AAGGATTTGG AGAATGTGGG TGTAACTGGA AGACATTTTT CATCATTTTG TATGATAGGA
CAACACAGTG TTCCTGATTT GGGTGGATAC TGGAAAGATG AATGTGTTGA TTTGGATTAT
AGGTTACTAA CAGAACAATT TGGAATTAAC AAAGACGAAG TAGTCTTTGT TGAAGATGTA
TGGGCAGGTG GGGGTTCATT TGGTCCATCA TTAGAATATT TTGTGCAAGG ATTAGAGCTT
GGAAATGCAG TCTTTACTGA ATTCCAAGGC GAATTAGGAA AACATACCAC CCTTGACCAA
AGGGTAATCG ATATGGGTGC AGGTCTTGAG AGATTTGCAT GGATTACCAT GGGAACACCT
ACTGCATATG ATTGCTGTTT TGGTCCAATT AATGAGAAAC TGTTTGGAAC AATTGGAATT
GATTCGGATT CAGAAATTTT AAGAAAATAC TTTACAGAAA TTGCAAAAGA GATTGATCAT
TACGATGACC TCAATCAAGT AAGACGTCTT GCAGTAAAGA ATGCAGGAAT TACAGATGAG
CAGATGCAAA AGATGATCAC ACCACTAGAA GGAATGTATC TAATTGCAGA TCATCTAAGA
ACTTTGATTT TTGCAATTAC TGATGGAGCT CTACCAAGTA ATGTAGGTGG AGGATACAAC
TTGAGAATGA TGTTGCGAAG AATCAATGCA ACCATATCAA AACTAAATTT GAAATTAAAC
ATTGATGACT TGATTGATTT GCATGTTGAT TATCTCAAGG ACACATATCC AGAACTTGAT
GAAAAGCGCG ATGATGTGAA ATCTATTCTC AAGCTAGAAT CTGCAAGATA TGAAGAGTCC
AAAGTTCACA TGAAGAAAAA AGCAGACAAG ATCAAAGAGA AAGGAGCACC ATCAGTTGAT
GAATTAATCA CATACTACGA ATCTGATGGT ATTACACCTG AATATCTTAA AGAAGTGGAT
GCAATTTCAG AAATTCCATC ATCATTTTAC TCAAAACTAT CTGATTTACA CCAATCAGAC
AAGAAAAAGG CAATTGCAGA ACTCCCACTA GAAGGATTAC CAGAAACTGA AACTCTATTC
TACCAAGATG ACCCAATGGA GTTTTCAGCC AAGGTTCTCA AAGTGATTGA TGATATGATA
GTACTTGATA GAACCTCATT CTATGCACGA GGTGGAGGTC AAGAGCCTGA CTTTGGCAGT
ATTGCAGGAT TCAAAGTGAT TAATGTCGAT AAACATGCAG ACATTATTGT TCATCAGTTA
GAAGGTGGAG TTCCAAAAGA AGGAGAAACT GTTTCATGTA AAGTTGATGA GACAAGACGG
TCCAACATTA CAAAGAATCA CACTAGTACA CACATCATCA ATGCATCATC ACGTAAAGTA
TTGGGTTCAT GGATTTGGCA GCATTCAGCT TTTAAAGACG ATGATCATGC CAGATTAGAT
ATTACACATC ACTCTTCTCT AAGTAATGAC GAAGTGCAAA AAATTGAAGA TGAGGCAAAT
GACATGATAA AGAAAAACTA TCCAGTAAAA ATCAATTATT ATGATAGAGG AACAGCAGAA
CAAAAGTACG GATTTAGAAT TTACCAGGGA GGTGTTGTTC CAGTAAAGTC TGTAAGGATT
GTATCAATTG AGGATAAAGA TATTGAAGCT TGTGGTGGGA CACATGTCAA AAAAACTGGA
GACATTGAAC TAATTAAAAT TACAAAGACT AAACGTATTC AAGATGGTGT AGTTCGTTTA
GAATTTGTAT CAGGTCCTAA TGCATTTGAA TATGAAAAAC AACAAGAACA AGAATCAAAA
CGCAAAGCTG AAGAGGCAGT TGCAAAAGAG CAATTAGAAA AACAAAGAGA GGAAAACAAA
TCTAAAGCTA GAGAAAAAAT TCCAGTTCTA TTGGAAAAAG TTCTTGCTGG AGAAGATGTA
GAATCTGATG GAATCAATAC CAAAGGAAAA TTGTGTTTTA CAGCAAGTTC AGATTATGAC
GATTATTTTC ATCAAAACTT TGGAAAGAAG CTAGTAGGCA AAGATAGTAC TGCTGCATTT
TGTGGGGTTT TCGAAGCAGG TCCTACAATT CGAGTCATGG TGTTCTCAGG AGAGCAATCA
GGCGTAAATG CAGGCGAAAT TGCCAAGAAA ATAGCCTCAA TTTTGGGAGG TTCTGGTGGA
GGAGATGCCA AATTTGCTCA AGGAGGAGGA AAAGACACAT CTAAAAAAGA CGAGGCAATA
TCCAAAGCAA AATCTATGAT TTTAGGGTAA
|
|---|
| Protein sequence | MDKKEILKEF SADPDKYYNV KLFQEQGFIR KSCAKCGRFF WTLNADRDLC PDDGLDTYSF
IGEPPTSKRF DYTQSWKQVE EFFVKNNHTS VSRYPVVCRW RDDLYFTIAS VVDFQRVMGS
KVVFEFPANP LVVPQTCLRF KDLENVGVTG RHFSSFCMIG QHSVPDLGGY WKDECVDLDY
RLLTEQFGIN KDEVVFVEDV WAGGGSFGPS LEYFVQGLEL GNAVFTEFQG ELGKHTTLDQ
RVIDMGAGLE RFAWITMGTP TAYDCCFGPI NEKLFGTIGI DSDSEILRKY FTEIAKEIDH
YDDLNQVRRL AVKNAGITDE QMQKMITPLE GMYLIADHLR TLIFAITDGA LPSNVGGGYN
LRMMLRRINA TISKLNLKLN IDDLIDLHVD YLKDTYPELD EKRDDVKSIL KLESARYEES
KVHMKKKADK IKEKGAPSVD ELITYYESDG ITPEYLKEVD AISEIPSSFY SKLSDLHQSD
KKKAIAELPL EGLPETETLF YQDDPMEFSA KVLKVIDDMI VLDRTSFYAR GGGQEPDFGS
IAGFKVINVD KHADIIVHQL EGGVPKEGET VSCKVDETRR SNITKNHTST HIINASSRKV
LGSWIWQHSA FKDDDHARLD ITHHSSLSND EVQKIEDEAN DMIKKNYPVK INYYDRGTAE
QKYGFRIYQG GVVPVKSVRI VSIEDKDIEA CGGTHVKKTG DIELIKITKT KRIQDGVVRL
EFVSGPNAFE YEKQQEQESK RKAEEAVAKE QLEKQREENK SKAREKIPVL LEKVLAGEDV
ESDGINTKGK LCFTASSDYD DYFHQNFGKK LVGKDSTAAF CGVFEAGPTI RVMVFSGEQS
GVNAGEIAKK IASILGGSGG GDAKFAQGGG KDTSKKDEAI SKAKSMILG
|
|---|
| |