Gene Nmar_0218 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagNmar_0218 
Symbol 
ID5774611 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNitrosopumilus maritimus SCM1 
KingdomArchaea 
Replicon accessionNC_010085 
Strand- 
Start bp194923 
End bp195597 
Gene Length675 bp 
Protein Length224 aa 
Translation table11 
GC content32% 
IMG OID641315838 
Productribose 5-phosphate isomerase 
Protein accessionYP_001581552 
Protein GI161527726 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0120] Ribose 5-phosphate isomerase 
TIGRFAM ID[TIGR00021] ribose 5-phosphate isomerase 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones44 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGTCATACG ATGGTGCCAT CACGGCATTA TCAAATAATG CATTAAAATT TGTAAAAGAT 
GATTATGTTG TTGGTTTAGG TAGTGGAAGA GCAGCTACTG TACTTGTTAA ATCACTTGGA 
AAATTAATCA AACTAAAAAA TTACAACATC AAAGGAGTTC CAACATCATT ACAAATCAAA 
CTAATTGCAG AAAAAGTTGG AATTCCGTTG ATAGAAGCTG ATCAAGTAGA ACATATTGAT 
GTAGTATTTG ATGGTGCAGA TCAAATTGAT TCTCAAAAAT TTGTAATCAA AGGAGGTGGA 
GGAGCTTTAC TTAGAGAGAA TATTTTGTTC AGTCTTGCAA AAAAAGTTGT AGTAATGGCA 
GACAAAACAA AATTTGTAAA AAACTTTACA AGAACTGTTC CAGTAGAAGT ACATCCACTT 
GCAAGAAATT CTGTATCAAA ATCTATGAAG AAATTAGGAG GCAAAGCAGA ATTGCGTTCA 
CTTGATAGAG GTTATCCATT TTTTACAGAA AATGGAAACA TTATCTTAGA TTGTGATTTT 
GGAACAATAA AAAATCCAAA GGCATTGACA CAAAAAATCA AAGCAACTAC TGGTGTCTTA 
GAATCAGGAA TTTTCCTCAG AAAGCCAGAT GTAATCTATA GAGCAAAAAC TGGCGAAAAA 
TTCGATATTT TATAG
 
Protein sequence
MSYDGAITAL SNNALKFVKD DYVVGLGSGR AATVLVKSLG KLIKLKNYNI KGVPTSLQIK 
LIAEKVGIPL IEADQVEHID VVFDGADQID SQKFVIKGGG GALLRENILF SLAKKVVVMA 
DKTKFVKNFT RTVPVEVHPL ARNSVSKSMK KLGGKAELRS LDRGYPFFTE NGNIILDCDF 
GTIKNPKALT QKIKATTGVL ESGIFLRKPD VIYRAKTGEK FDIL