| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nmar_0117 |
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| Symbol | |
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| ID | 5773852 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nitrosopumilus maritimus SCM1 |
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| Kingdom | Archaea |
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| Replicon accession | NC_010085 |
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| Strand | + |
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| Start bp | 105630 |
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| End bp | 106637 |
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| Gene Length | 1008 bp |
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| Protein Length | 335 aa |
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| Translation table | 11 |
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| GC content | 29% |
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| IMG OID | 641315737 |
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| Product | polysaccharide biosynthesis protein CapD |
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| Protein accession | YP_001581455 |
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| Protein GI | 161527629 |
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| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1086] Predicted nucleoside-diphosphate sugar epimerases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.00000000592797 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | TTGCAATCAA TTTTAAATAA AAAAAATATT CTTGTTACTG GTGGAACCGG TTCTATAGGA
CAAGCTTTGG TTCAAAGAGC TATATCTGAT GGCGCAAAAC ATATCAAAGT TTTCAGTAAT
GATGAAAATG CCCTTTATGA AATGGAATTA GATTTTTCTA AACATAAAAA CATCGAATAC
ATAATTGGCG ATATTAGAGA TTTTGATAAA ATCAATTCAA TCGTAAAAAA TTGTGATATT
ATTTTCCATG CCGCTGCACT CAAACATGTA GATAGATGTG AATTATATCC ATTAGAAACA
ATGACCGTAA ACATAATTGG AACAAATAAT GTTGCAAAAG CTGCAGTCAA TGCGAATGTA
TCAAAAGTTA TTTCTATTAG TACTGATAAA GCTGTAAATC CTATAGGTGT GATGGGTGCA
ACAAAACTTC TTGCAGAAAA ATTAATTGCC GCTGAAGCAT ATCATTCAAA ATCAAAGACA
GTTTTTTCCT CTGTACGATT TGGAAATGTA TTTCATACTA GAGGTTCAAT ATTACCTAAG
ATAGAAAAAC AAATTCAAAA TGGTGGTCCT TTAACATTAA CTGATGAAAG AATGAAACGA
TTTTTTATGA CTAAAGAAGA TGCAGTTGAT TTAATTTTAA ACGCAGCTTA TACTGCTAAA
GGTGGAGAAA CTTTTATTCT CAAAATGCCT ATGCTGAATT TAAAAGATCT TTTTGAAGCA
ATGAAAATTG TAATTGGTCC AAAACATGGG TATTCATCAA CAAAAATAAA AACAAAAATT
ACTGGAATTA GACCTGGTGA AAAATTAACC GAATATCTAT TAACAAATTT TGAAATGGAA
CATTGTTTAG AAACAAAGAA TTTTTTTATA ATTCCTAAAA TGTTTGAATC TTTAGATCCC
AAAAAATATC CTGGTTCAAA AAAACCAAAG AACACAACAA AGTATTTCGA AACTGTTAAA
CCAATTTCAC AAGAACAGAT TGTCAAACTT TTAAAAAAAA TTTATTAA
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| Protein sequence | MQSILNKKNI LVTGGTGSIG QALVQRAISD GAKHIKVFSN DENALYEMEL DFSKHKNIEY
IIGDIRDFDK INSIVKNCDI IFHAAALKHV DRCELYPLET MTVNIIGTNN VAKAAVNANV
SKVISISTDK AVNPIGVMGA TKLLAEKLIA AEAYHSKSKT VFSSVRFGNV FHTRGSILPK
IEKQIQNGGP LTLTDERMKR FFMTKEDAVD LILNAAYTAK GGETFILKMP MLNLKDLFEA
MKIVIGPKHG YSSTKIKTKI TGIRPGEKLT EYLLTNFEME HCLETKNFFI IPKMFESLDP
KKYPGSKKPK NTTKYFETVK PISQEQIVKL LKKIY
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