Gene Pmob_1877 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmob_1877 
Symbol 
ID5757535 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePetrotoga mobilis SJ95 
KingdomBacteria 
Replicon accessionNC_010003 
Strand- 
Start bp2074113 
End bp2075114 
Gene Length1002 bp 
Protein Length333 aa 
Translation table11 
GC content28% 
IMG OID641303072 
ProductCRISPR-associated Cas1 family protein 
Protein accessionYP_001568887 
Protein GI160903306 
COG category[L] Replication, recombination and repair 
COG ID[COG1518] Uncharacterized protein predicted to be involved in DNA repair 
TIGRFAM ID[TIGR00287] CRISPR-associated endonuclease Cas1
[TIGR03641] CRISPR-associated endonuclease Cas1, HMARI/TNEAP subtype 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGAAACCTA TCTATATATT TCAAAGCGGA ACGTTATCTA GAAAAGGAAA CACACTAGCC 
TTTAAAAATG AATCTGATGA AAAAACAAAG TACTTCCCGA TAGAAAACAT TTCAGAAATA 
AAGATATTTG GAGAAATAAA CATAAACAAA CGACTTCTTG AATTCTTGTC AGCCAATAAC 
TTACCACTCC ATTTTTTCAA CCATTATGGT TTTTATGTGG GAAGTTTTTA TCCATATGAG 
CATAATACAA ATGGAATAAC AATAGTTAAA CAAGTAGAGC ACTATATCTC CTCAGAAAAA 
AGATTAGTTT TAGCAAAAAA GTTTGTAGAA GGAGCTATGC AAAACATCTT AAAGATTGTG 
CAATATTATG AAAGGAAAAA CGATTTAACA ATAAAACGGT ATTCGCAAAA AATGGAAGAA 
TTTATTCAGA ATATTCCCCA GATTGGTTCT ATTAACGAAT TAATGGCACA AGAGGGAAAT 
TATAGAGAGA TTTATTATAA TTTTATTGAT AACAATATAA TCTCAAATGA AGATTTCAAA 
ATGGTTGTCA GAGAAAAAAG GCCCCCTACA AATTACCTGA ACACACTTAT CAGTTTTGGA 
AATTCTTTAA TGTACTCTAC AGTTTTAACG CAAATTTATC AAACACCATT AGATCCTAGA 
ATTGGCTATC TTCATTCAAC TAACTTTAGA AAATTTTCTT TGAACCTTGA TATAGCTGAA 
ATATTTAAGC CCATTGTGGT AGATAGAACT ATTTTTAACC TTGTGAATAA AAAAATAATT 
AATGAAAACC ATTTTAAAAA AGTTCAAGGC GGCATTCACT TGAACGAAGA AGGCCAAAAA 
AATTTTATAA AAAATTATGA AGAGCATTTA AGTACAACTT TAAAACATAA AAAATTAAAA 
AGAAATATTA CCTACAGAAC ATTGATAAAA CATGAGGCTT ATAAGATTTT AAAACATCTG 
ATAGAAGAAA AAGAATACGT TCCTTTTACA ATGAGGTGGT AA
 
Protein sequence
MKPIYIFQSG TLSRKGNTLA FKNESDEKTK YFPIENISEI KIFGEININK RLLEFLSANN 
LPLHFFNHYG FYVGSFYPYE HNTNGITIVK QVEHYISSEK RLVLAKKFVE GAMQNILKIV 
QYYERKNDLT IKRYSQKMEE FIQNIPQIGS INELMAQEGN YREIYYNFID NNIISNEDFK 
MVVREKRPPT NYLNTLISFG NSLMYSTVLT QIYQTPLDPR IGYLHSTNFR KFSLNLDIAE 
IFKPIVVDRT IFNLVNKKII NENHFKKVQG GIHLNEEGQK NFIKNYEEHL STTLKHKKLK 
RNITYRTLIK HEAYKILKHL IEEKEYVPFT MRW