| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_5827 |
|---|
| Symbol | |
|---|
| ID | 5751448 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Delftia acidovorans SPH-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010002 |
|---|
| Strand | - |
|---|
| Start bp | 6483239 |
|---|
| End bp | 6484309 |
|---|
| Gene Length | 1071 bp |
|---|
| Protein Length | 356 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 641300959 |
|---|
| Product | AraC family transcriptional regulator |
|---|
| Protein accession | YP_001566840 |
|---|
| Protein GI | 160901258 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.178908 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 35 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGGATGCAG ATCCAGATAT CGATTGCGGC ACAAGCATAT GCCCAAAGAT TCGTTCCCCC
GCGCCTGCAT CGTGGCGATA CTGGCCGGCC GCATTCCCTC CACCGCCTCA GCTTTTTCAC
CGCCGCACCG TGCTACCCGA CCCAGTCCCC GACAGCGCGG CCGAAGCGCA GGTCGATCGC
GTCATCGACG GCCTGCTCAA CGGCCTGCAA TGGCGCGCCA GCGTGTTCCA CGTGGGGCAG
TACTGCGGGC GCTGGCGGGC CTCCACGGCG GGGCGCGCGC GGGCCAGCTT TCACCTGATC
CTGGACGGGC GCTGCTGGCT GCACCTGCCG GGCCAGCCCT CGGTGGAGCT GCAGCCGCGC
GACGGCGTGT TCCTCTCGCG CGATGTGCCG CATTTCATCT CGCCCTATGC CGACCCGGAC
ATGGCCTGCG CCCCGCAGGC CATGCGTCCC GCCACGGGCG ATGCCGGCAT CGGAGAGACG
GCGCTGGCCT GCGGCTTCTT CACCTTCGAG GGGCCCATGC GCGGCCTGCT GGTCGATGCC
TTCCCCGACC ACCTGGTGCT GCGCGGCGAC GACCATGCGA TGAGCGGCGC CTCCATGCTG
TTCGACCTGA TGCGCGCCGA GGCGCTGCGC ACGGGCACCG AGCCCTCGGC CGTGATGGAC
CGGCTGGTGG GCCTGCTGTT CTTCTACGGC CTGCGCCAGC TGGCGCATGG CGATGCGCGG
GCGCGCGGCA TCTGGAGCCT GCTGCGCCGG CCGGGCTTTG CGCCGCTCGT GGCCGAGCTG
CTGCGCGAGC CGGCCCGCAA CTGGAGCGTG GCCGACATGG CCGCGCGCGT GTGCCTGTCG
CGCGCCACGT TCTTTCGGCA GTTCGCCGAG GCCTGCGGCC AGCCGCCCCA GCAATTCCTG
CTGCTGCTGC GCATGCAGCT GGCCGCGCGC CGGCTGGCCC AGGGCGAGGC CATAGGCCAG
GTGGCCGAGG CCGTGGGCTA CGAGTCCTAT GCGGCTTTCT CGCGCGCCTT CAAGCGCGTG
ATGGGCGAGC AGCCCGGCGC CTGGCAGCGC GCGCAGGCAC GCTGCTGCTG A
|
|---|
| Protein sequence | MDADPDIDCG TSICPKIRSP APASWRYWPA AFPPPPQLFH RRTVLPDPVP DSAAEAQVDR
VIDGLLNGLQ WRASVFHVGQ YCGRWRASTA GRARASFHLI LDGRCWLHLP GQPSVELQPR
DGVFLSRDVP HFISPYADPD MACAPQAMRP ATGDAGIGET ALACGFFTFE GPMRGLLVDA
FPDHLVLRGD DHAMSGASML FDLMRAEALR TGTEPSAVMD RLVGLLFFYG LRQLAHGDAR
ARGIWSLLRR PGFAPLVAEL LREPARNWSV ADMAARVCLS RATFFRQFAE ACGQPPQQFL
LLLRMQLAAR RLAQGEAIGQ VAEAVGYESY AAFSRAFKRV MGEQPGAWQR AQARCC
|
|---|
| |