| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_5648 |
|---|
| Symbol | |
|---|
| ID | 5751268 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Delftia acidovorans SPH-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010002 |
|---|
| Strand | + |
|---|
| Start bp | 6279977 |
|---|
| End bp | 6281395 |
|---|
| Gene Length | 1419 bp |
|---|
| Protein Length | 472 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 641300780 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001566661 |
|---|
| Protein GI | 160901079 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG1690] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.00134904 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGACCACTC CTCAACGACT CCAGCGTGCC TTTGCACGCA CGGGCATCTC TCTCGACTAT
CGCGACGGCA TCTACCACGT GCGCGATGGC CAGGCCGAGG CCCACATCCT TCTTCCCGAC
AGCCTTCCCC TGGAGGACAA GGCCGTGCGC CAGTTGCTGG CCTTTGCGGC CGTGCGCCGG
CATGACGGCC AGGGCAGCCA CGGCGCCGTC TGCCGCGCCT GCGCCACGCC CGACTTCCAT
CCGGGCACGG TGGCGCCCGT GGGCAGCGTG GTGGCCACGC CATCGGACTT CGTCATTCCG
GCCGCCATCG GCACGGACAT CAACTGCAGC GTGCGCCTGC TGACCACGGG CGCCCGGCTG
GACCAGCTGG CGCCACACAA GGGCCGGCTG GTGGAACTGC TGACCGCCAG CCTGCTGGGC
AGCGGGCGCG ACGTGCCCGT GACCACGGCC GCCTTCCGCG CGCTGTTCGA CCACGGGCCG
GCCGCCTTTG TGGACCGGCT GAATGGCCAG GGCCTGTGGG GCCATGTCGA CAGGGACCGC
CTGCACCGCG AGCTGGCCGC CTGCATCGGC CTGGACAGCT TCGCTGGCAG CGCCCGCCAT
GCGCCCCATG CCTATCTGCA GGAGCGCCAT GCCGTGTTCC GCGACCCGTG CCTGGGCACG
GTGGGATCGG GCAACCATTT CGTGGAACTG CAGGTGGTCG ATGAGGTGCT GGACCGTCAC
GCGGCCTACC GGGCCGGCCT GCGCGCGGGC GACGTGGTGG TGATGATCCA CAGCGGCTCG
CGCGACCTGG GCTTTTACGT GGGCCAGGCC TGGATGGACC GCGCCCGGGC CGAGTGGCCG
CAAGGCGTGA AGCACCCGGC CAGCGGCCTG TACGGCCTGT CGGGTCCGCT GGCCGGCGAG
TACCTGCAGG CCATGGGCGT GGCGGCGCGC TATGCCTGGG CCAACCGCGT GGTGCTGGCC
GAGCTGGTGC GCAAGGACCT GGAGCAGATC GTGGGCGCAG CGGATTCGCG CCTCGTGGTC
GATGTGCCGC ACAACGTGGT CCTGCAGCAA GGCGGCATGA ACATCCACCG CAAGGGCGCC
ACGCCAGCCA ACGAGGGCGA CTTCGCGCTG ATCCCGGGGT CCATGGGCGA TGCCTCCTAC
CTGGTCACGG GCCTGGGTGC GGCCGACTGG CTCTGGTCCT GCAGCCATGG CGCGGGGCGG
CGCATGCGCC GCCAGGCCGT GCGCGCGCTG CGCCCCGAGG CACATGCGGG CCGTGCGGGC
GAACAGGGCT GGCAATGCGT GACGCTGCGC GAGGAGCGGC GCATCGAGGA GGCGCCCGAA
GCCTACAAGC CCATCGGCCC GGTCATCGAG TCGCAGGAGG CCGCCGGCCT GATCCACGCC
GCCGTGAAGC TCAGGCCCTG GATCACCTTC AAGGCCTGA
|
|---|
| Protein sequence | MTTPQRLQRA FARTGISLDY RDGIYHVRDG QAEAHILLPD SLPLEDKAVR QLLAFAAVRR
HDGQGSHGAV CRACATPDFH PGTVAPVGSV VATPSDFVIP AAIGTDINCS VRLLTTGARL
DQLAPHKGRL VELLTASLLG SGRDVPVTTA AFRALFDHGP AAFVDRLNGQ GLWGHVDRDR
LHRELAACIG LDSFAGSARH APHAYLQERH AVFRDPCLGT VGSGNHFVEL QVVDEVLDRH
AAYRAGLRAG DVVVMIHSGS RDLGFYVGQA WMDRARAEWP QGVKHPASGL YGLSGPLAGE
YLQAMGVAAR YAWANRVVLA ELVRKDLEQI VGAADSRLVV DVPHNVVLQQ GGMNIHRKGA
TPANEGDFAL IPGSMGDASY LVTGLGAADW LWSCSHGAGR RMRRQAVRAL RPEAHAGRAG
EQGWQCVTLR EERRIEEAPE AYKPIGPVIE SQEAAGLIHA AVKLRPWITF KA
|
|---|
| |