| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_5540 |
|---|
| Symbol | |
|---|
| ID | 5751160 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Delftia acidovorans SPH-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010002 |
|---|
| Strand | - |
|---|
| Start bp | 6154531 |
|---|
| End bp | 6155904 |
|---|
| Gene Length | 1374 bp |
|---|
| Protein Length | 457 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 641300673 |
|---|
| Product | putative transmembrane protein |
|---|
| Protein accession | YP_001566554 |
|---|
| Protein GI | 160900972 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG4267] Predicted membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 35 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCGGCA TTGGATTCGA ACTGCGCCAC CTGCTGCGCA AGAACACGCT GACCAGCGTG
CTCCAGGCCT ACGCCTATGC GGGCGTCATC GGCTCGGGGC CGTGGGTGTT CTCCATCATC
GGCATCCTGC TGGTGGGGGT GTTCAGCGTC AGCGTGGTGG CGCCGCCGCT GCTGGTCACG
CAGTTCCAGA CCTCGGTCAC CTACCTGGTG GCCAGCAGCC TGATCCTGAC CGGGGCGGCG
CAGCTGGCCT TCACGCGCTT TGTGTCGGAC CAGCTGTTCC TCAAGAAGGA CGAGAGCATC
CTGCCCAACC TGCACGGCCT GCTGCTGGTG GTCGTGGCCA CGGCCAGCGC GCTGGGCACG
CTGGCGCTGT TCGTGGTGCT GCCGGGCCAG GGCCTGCTGT ACCGCGTGCT GATGCTGGCC
GGCTTCACGC TGATGTGCGT GGTCTGGGTC ATGACCGTGC TGCTGTCGGG CCTCAAGCAC
TACCGGGCCA TTGCCGGGCT GTTCGGCGCC ACCTACCTGC TCATCGTGCT GCTGGCGCTG
CCGCTGCGCT ACTGGGGGCT GGAAGGGCTG CTGGCCAGCT TCGTGATCGG CCACGTGCTG
CTGCTGGCCG GCATGTGGAT GATCGTGCTG CGCAGCTTTC CGCTGCAGCA GCGCTGGATC
GCCTTTGACT TCACGCAGCG CTCGCTGATC TTTCCGGCGC TGATCGGCAT CGGCGTGCTC
TACAACCTGG GCATCTGGAT CGACAAGTTC ATGTTCTGGT ACTACCCGCC GACCTCGCAG
CAGATCATCG GCGGGCTCAG GGCCTCGCTG ATCTACGACC TGCCGGTGTT CCTGTCGTAC
CTGTCCATCA TTCCGGGCAT GGCGGTCTTC CTGGTGCGCA TCGAGACCGA CTTCGTCGAG
TACTACGACA AGTTCTTCGA CGCCGTGCGC GGCGGCGGAT CGCTGGAATA CATCGAGTCC
ATGCGCAACG AGATGGTCTA CGCCATCCAG GCGGGCCTGG GCGAGATCGC CAAGGTGCAG
ACGCTGGCCG TCCTCGTCAC CCTGGTGGCC GGGCCGGCCA TCCTGCAGTT GCTGGGCATC
TCCCAGCTGT ACCTGCCGCT GCTGCACGTG CAGGTGGTGG GCGCCGGCTT GCAGGTGGGT
GTGATGGCCG TGCTCAACGT GTTCTTCTAC CTGGACGAGC GGCGCATCGT GTTCATGCTC
TGCCTGCTGC TGGTGGCGCT GAACATTGCC TTCACGGGCA TCTCGCTGGC GCTGGGCGCC
GCGTTCTATG GCTACGGCTT TTGCCTGGCC ATGCTGGTGA CGCTGTGCGT GGGGCTGTAC
CTGCTCTCGC GCGAGCTCAA CCGGCTCGAA TACAAGACCT TCATGCTGCA GTGA
|
|---|
| Protein sequence | MAGIGFELRH LLRKNTLTSV LQAYAYAGVI GSGPWVFSII GILLVGVFSV SVVAPPLLVT
QFQTSVTYLV ASSLILTGAA QLAFTRFVSD QLFLKKDESI LPNLHGLLLV VVATASALGT
LALFVVLPGQ GLLYRVLMLA GFTLMCVVWV MTVLLSGLKH YRAIAGLFGA TYLLIVLLAL
PLRYWGLEGL LASFVIGHVL LLAGMWMIVL RSFPLQQRWI AFDFTQRSLI FPALIGIGVL
YNLGIWIDKF MFWYYPPTSQ QIIGGLRASL IYDLPVFLSY LSIIPGMAVF LVRIETDFVE
YYDKFFDAVR GGGSLEYIES MRNEMVYAIQ AGLGEIAKVQ TLAVLVTLVA GPAILQLLGI
SQLYLPLLHV QVVGAGLQVG VMAVLNVFFY LDERRIVFML CLLLVALNIA FTGISLALGA
AFYGYGFCLA MLVTLCVGLY LLSRELNRLE YKTFMLQ
|
|---|
| |