| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_5539 |
|---|
| Symbol | |
|---|
| ID | 5751159 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Delftia acidovorans SPH-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010002 |
|---|
| Strand | - |
|---|
| Start bp | 6153516 |
|---|
| End bp | 6154322 |
|---|
| Gene Length | 807 bp |
|---|
| Protein Length | 268 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 641300672 |
|---|
| Product | extracellular solute-binding protein |
|---|
| Protein accession | YP_001566553 |
|---|
| Protein GI | 160900971 |
|---|
| COG category | [E] Amino acid transport and metabolism
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 34 |
|---|
| Fosmid unclonability p-value | 0.959026 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAAC GCACCCTCTT GGCCATGGTG GCCCTGTCTG CACTGCTGGC AGCCTGCGGC
AAGAACGAGT CCGCATCCAC CGCCGCCGCG CCGGTTGCCG CCCCCGTGCC GGCAGCCATG
ACCAAGTTGG TGATCGGCCT GGACGACAAC TTCCCGCCCA TGGGCTTTCG TGACGACAAG
AACGAGATCG TCGGCTTCGA CATCGACATG GCGCGTGAAG CCGCCAAGCG CATGAACGTG
GAAGTGGACT TCAAGCCCAT CGACTGGAGC GCCAAGGAGG CCGAGCTGGT CGGCAAGCGC
GTCGACGCGC TGTGGAACGG CCTGACCATC ACCGAAGAGC GCAAGAAGAA CATCGCCTTC
ACCGCGCCCT ACATGGAGAA CCACCAGATC ATCATCGTGC GCGCCAACTC CGACATCAAG
GACAAGGCCG GCCTGGCAGG CAAGGTCGTG GGCGCGCAGG ATGGCAGCTC GGCCGTGGAC
GCCATCAAGA AGGACGCCGC CGTGGCCGCC AGCTTCAAGG ACCTGAAGAC CTTCGGCGAC
AACATCACCG CGCTGATGGA CCTGTCGGCC GGCCGCCTGG ACGCCGTCGT GGTCGACGAG
GTCGTGGGGC GCTTCCACGT GGCCAAGAAG GCTGGCGAGT ACCTGGTGCT CGAGGACAAC
TTCGGCACCG AGGACTACGG CGTGGGCCTG CGCAAGGAAG ACACCGAAGT TCTGGGCAAG
CTCGAAGCCG CGCTGGCCGA GATGAAGAAG GACGGCAAGG CCGCCGAAAT CGCCTCCAAG
TGGTTCGGCA AGGACATCAT CAAGTAA
|
|---|
| Protein sequence | MKKRTLLAMV ALSALLAACG KNESASTAAA PVAAPVPAAM TKLVIGLDDN FPPMGFRDDK
NEIVGFDIDM AREAAKRMNV EVDFKPIDWS AKEAELVGKR VDALWNGLTI TEERKKNIAF
TAPYMENHQI IIVRANSDIK DKAGLAGKVV GAQDGSSAVD AIKKDAAVAA SFKDLKTFGD
NITALMDLSA GRLDAVVVDE VVGRFHVAKK AGEYLVLEDN FGTEDYGVGL RKEDTEVLGK
LEAALAEMKK DGKAAEIASK WFGKDIIK
|
|---|
| |