| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_5219 |
|---|
| Symbol | |
|---|
| ID | 5750831 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Delftia acidovorans SPH-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010002 |
|---|
| Strand | - |
|---|
| Start bp | 5785128 |
|---|
| End bp | 5786477 |
|---|
| Gene Length | 1350 bp |
|---|
| Protein Length | 449 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 641300344 |
|---|
| Product | homoserine dehydrogenase |
|---|
| Protein accession | YP_001566233 |
|---|
| Protein GI | 160900651 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0460] Homoserine dehydrogenase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.697669 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 50 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACCGA TCCAAGTAGG CCTTCTGGGC ATTGGCACCG TGGGCAGCGG CACCTTCAAC
GTGCTGCAGC GCAATCAGGA AGAGATCCGC CGCCGTGCGG GCCGCGGTAT TGAGATTGCC
ATGGTGGCCG ACCTGGATAC GGAACGCGCC CGCTCCGTCG TGGGCGACAC GGCCAAGGTG
GTCGGCGATG CGCGCGAGAT CATCGCCAAC CCCGAGATCG ACGTGGTGAT CGAGCTGATC
GGCGGCTACG GCATTGCCAA GGCCCTGGTG CTGGAAGCCA TTGCCGCCGG CAAGCATGTA
GTCACGGCCA ACAAGGCCCT GCTGGCCGTG CATGGCAGCG AAATCTTCAA GGCCGCCGCC
GAGAAGGGCG TGATGGTGGC CTACGAAGCG GCCGTGGCCG GTGGCATCCC CATCATCAAG
GCGCTGCGCG AAGGCCTGAC GGCCAACCAG ATCCAGTGGG TGGCCGGCAT CATCAACGGC
ACGACCAACT TCATCCTGTC CGAAATGCGC GACAAGGGCC TGGACTTCGA CGTGGTGCTC
AAGGAAGCCC AGCGCCTGGG CTATGCCGAA GCCGACCCGA CCTTCGACAT CGAAGGCGTG
GACGCCGCCC ACAAGGTCAC GCTGATGAGC GCCATCGCCT TCGGCATTCC CGTGCAGTTC
GACAAGGCGC ATGTGGAAGG CATCACCAAG CTGTCTGCGG CCGACATCAA GTACGCCGAG
CAACTGGGCT ACCGCATCAA GCTGCTGGGC ATCACCAAGC GCACGGACAA GGGCATCGAG
CTGCGCGTGC ACCCCAGCCT GGTGCCGACC AAGCGCCTGA TCGCGAACGT GGAAGGCGCG
ATGAACGCCG TCGTCGTGCA TGGCGACGCC GTGGGCACGA CGCTGTACTA CGGCAAGGGC
GCGGGCTCCG AGCCCACGGC CAGCGCCGTG ATCGCCGATC TGGTGGACAT CGCCCGCCTG
CACACGGCCG ATCCCGAGCA CCGCGTGCCC CCGCTGGCCT TCCAGTCGAA CACGCTGGTC
GCCGCAGGTG GCGAGCTGCC CGTGCTGCCC ATGAGCGAGG TGGTCACCAG CTACTACCTG
CGCATCCGCG TGGCCGACGA AGCCGGTGTG CTGGCCAAGA TCACCAGCAT CCTCGCGGGC
ATGGGCATCA GCATCGACGC CCTGCTGCAG CGGGAGGCCG GCGAAGTGAG CGGCGACAGC
GAAGGCAGCC AGGGCGTGCC GCAGACCGAC CTGATCATCC TGACCCATGC CACGCGCGAA
GGCGATATGG ACACGGCCCT GGCCCAGATC CAGCAACTGC CCACGGTGCT GGCCCCTATC
AACCGCATCC GCAAGGAAGA GTTGAACTAA
|
|---|
| Protein sequence | MKPIQVGLLG IGTVGSGTFN VLQRNQEEIR RRAGRGIEIA MVADLDTERA RSVVGDTAKV
VGDAREIIAN PEIDVVIELI GGYGIAKALV LEAIAAGKHV VTANKALLAV HGSEIFKAAA
EKGVMVAYEA AVAGGIPIIK ALREGLTANQ IQWVAGIING TTNFILSEMR DKGLDFDVVL
KEAQRLGYAE ADPTFDIEGV DAAHKVTLMS AIAFGIPVQF DKAHVEGITK LSAADIKYAE
QLGYRIKLLG ITKRTDKGIE LRVHPSLVPT KRLIANVEGA MNAVVVHGDA VGTTLYYGKG
AGSEPTASAV IADLVDIARL HTADPEHRVP PLAFQSNTLV AAGGELPVLP MSEVVTSYYL
RIRVADEAGV LAKITSILAG MGISIDALLQ REAGEVSGDS EGSQGVPQTD LIILTHATRE
GDMDTALAQI QQLPTVLAPI NRIRKEELN
|
|---|
| |