| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_5194 |
|---|
| Symbol | |
|---|
| ID | 5750806 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Delftia acidovorans SPH-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010002 |
|---|
| Strand | + |
|---|
| Start bp | 5758771 |
|---|
| End bp | 5759403 |
|---|
| Gene Length | 633 bp |
|---|
| Protein Length | 210 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 641300319 |
|---|
| Product | type IV pilus modification protein PilV |
|---|
| Protein accession | YP_001566208 |
|---|
| Protein GI | 160900626 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4967] Tfp pilus assembly protein PilV |
|---|
| TIGRFAM ID | [TIGR02523] type IV pilus modification protein PilV |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 0.524323 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 67 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCGAAT CCCTGGTCGC CATCGTCGTG GCGGCGCTGG GCATCCTGGG CATTCTGGGC
ACGCAGATGC GTACGCTGAC GGATACCCAG ACCACGGTCC GGCGCGCACA AGCCATCCGC
CTGATCGAGG ATCTGGGCGA GCGCATGAAG GTCAACCCCA GCGTGCTGAG GGATGCCGAC
GCCTATGTCG CCGATTTCAA CACCACGCCC GCCCCTGGCG ATTGCCAGGC GGCCTCGTGC
AACCGCACGC TTTTGGCAGC CTACGACCTG GGTGTATGGA AGCAGACGGT CAAGAACACA
CTGCCCCTGG GCCAGGCCAG CATCTTTCTT GCTCCGGGTG AAGAAGTCGG CGCCAACCGC
CGGCAGATCG GCGTGATGGT CGCCTGGCGC GAGAACGAGC GTGACCTGTC CGACAGCAGT
CAGGCCAATC AAAAGGCCTA CAGGGACAAC ATCGATGCCA CGCAAGTCCG GGCTGCCGAT
GGCACGCTGA GTTCAGGCGG AGGCGGCACG ACAGCGACCT CCTGCCCCGA TGGCTACACC
TGCCATCTCC AATACCTTCC GCTGGCTGCA CGTTGCGCGC CCTACTTCGG CAGCGGTGAA
GCGATTCCCC AATACTTCTG CCCAGGATTC TGA
|
|---|
| Protein sequence | MIESLVAIVV AALGILGILG TQMRTLTDTQ TTVRRAQAIR LIEDLGERMK VNPSVLRDAD
AYVADFNTTP APGDCQAASC NRTLLAAYDL GVWKQTVKNT LPLGQASIFL APGEEVGANR
RQIGVMVAWR ENERDLSDSS QANQKAYRDN IDATQVRAAD GTLSSGGGGT TATSCPDGYT
CHLQYLPLAA RCAPYFGSGE AIPQYFCPGF
|
|---|
| |