| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_4550 |
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| Symbol | |
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| ID | 5750138 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Delftia acidovorans SPH-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010002 |
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| Strand | - |
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| Start bp | 5001942 |
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| End bp | 5006117 |
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| Gene Length | 4176 bp |
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| Protein Length | 1391 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 641299651 |
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| Product | ATP-dependent helicase HrpA |
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| Protein accession | YP_001565564 |
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| Protein GI | 160899982 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1643] HrpA-like helicases |
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| TIGRFAM ID | [TIGR01967] ATP-dependent helicase HrpA |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 0.331975 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGGGGGT TTTCATGCGG GCGGCACAGG GCAGGCGTAT GGAAATCTGC AGCCGCGTGG
CGCCGCCGGC ATGGCGCGGG GATAATCCAG CCCCTTATGC CTTTGAAGAT CAGCTTCCCT
GAATCCCTGC CCGTATCCGC CCGCCGTGAG GAAATCATGG AGGCCATGGA CCGGCACCAG
GTCATCATCG TGTGCGGCGA AACGGGCTCG GGCAAGACCA CGCAGCTGCC CAAGATCGCG
CTGGCGCTGG GCCGGGGCAA GGTCAACGCC ACGCCCGACG ACAAGGGCCA GGTGCGCGGC
CACCTGATCG GCCACACGCA GCCGCGCCGC ATTGCCGCCA GCTCGGTGGC CAAGCGCATT
GCCGAGGAGC TGAACACGCC GCTGGGCGAT GTGGTGGGCT ACAAGGTGCG TTTCCAGGAC
CGGCTTTCCA AGGACGCCTC GGTCAAGCTG ATGACGGACG GCATCCTGCT GGCCGAGACG
CAGACCGATC CGCTGCTCAA GGCCTACGAC ACCCTGATCA TCGACGAGGC CCACGAGCGC
AGCCTCAACA TCGACTTCCT GCTGGGCTAC ATCAAGCAGA TCCTGCCCCG GCGCCCCGAC
CTCAAGGTGG TGGTGACATC GGCCACCATC GATGCCGAGC GGTTCTCCAG GCATTTCGAA
GGCCCCAAGG GGCCTGCGCC GGTGATCATG GTCTCGGGCC GCACCTACCC CGTGGAGATG
CGCTGGCGCC CCTTCGAGGA AAAGCGCGAC CACGACCTCA ACGACGCCAT CGCCGAAGGC
GTGGACGAGC TGTGGGCCGG CGGCGTCAGC GGCGACATCC TGGTGTTCCT GCCCGGCGAG
CGCGAGATCC GCGAGGCGGC CGACCACCTG CGCAAGCACC TGGCACAGCA GCCCGTGCTG
CGCCATGCCG AGGTGCTGCC GCTGTTCTCG CGCCTGTCGC AGGCCGAGCA GGACCGCATC
TTCGACAGCC ACACAGGCCG GCGCATCGTG CTGGCCACCA ACGTGGCCGA GACCTCGCTG
ACCGTGCCCG GCATCCGCTA TGTGATCGAT GCGGGCACGG CGCGCGTCAA GCGCTATTCC
TTCCGCAGCA AGGTCGAGCA GCTGCTGGTC GAGCCCATCA GCCAGGCGGC GGCCAACCAG
CGCGCCGGCC GTTGCGGCCG CGTGGCCAAC GGCATCTGCA TCCGCCTCTA CGACGAGGCC
GACTTCGGCA CGCGCGCGCG CTTCACCGAC CCTGAAATCC TGCGCTCCTC GCTGGCCGGC
GTCATCCTGC GCATGAAGTC GCTGGGCCTG GGCGACGTGG TGAATTTCCC CTTCCTCGAA
GCGCCCTCGG GCCGCGCCAT TGCCGACGGC TACCAATTGC TGGGCGAGCT GGGCGCCGTG
GACGAGCGCG GCGAGCTGCT GCCCATGGGC CGCGAGCTGT CGCGCCTGCC GCTGGACCCG
CGCGTGGGCC GCATGATCCT GGAGGCGCGC ACGCGCGGCG CCGTGGCCGA GGTGCTGGTC
ATCGCCTCCG CCCTGTCCGT GCAGGACGTG CGCGACCGGC CGCTGGAGGC CCAGCAGCAG
GCCGACCAGC AGCACGCCAA GTTCGACGAC GAGAAAAGCG AATTCAGCGG CTACCTGCGC
CTGTGGAAAT GGCTGCAGGA TGCGCGCGGC GGCAAGGTGG TGGCCAAGAG CCGCAAGGAA
ATGGCCACGG CCCAGGCGCC TGCCGCCAAG CCATCGGCGC GCAATGCCGC CTTCCTGCCC
GTGGCCCAGC GCAGCGGCGG GCAGAGCGTG GCCGCCCCGG CGGCCGAGGC GCTGGCGGCC
TTCCATCCGC AGGACACCGG TCCCGGCACG GATGACGAGC CCTCGCACAA GCTCAGCAAC
CGCCAGTGGG AGCAGCTGCT GCGCCAGAAC TTCATCAACA TCCGCCGCGT GCGGGAATGG
CGCGACATCC ACTCGCAGCT GCTGACCGTG GTCAACGAGC ACAAGTGGAA GATCAACACC
GAGCCTGCGG GCTACGACGC CGTGCACCTG TCCATGCTGT CCGGCCTGCT GGGCAACCTG
GGCTACAAGG GCGATGAAAG CGACGCCTAC CTGGGCGCGC GCGGCATCCG CTTCTACCCG
CACCCGGGCG CCCACCTGTC CAAGAAGCCG GGGCGCTGGA TCGTTGCGGC CGAGCTGGTG
GAAACCTCGC GCCTGTACGG CCGGGGCATC GCCGCCATCG ATCCGCAGTG GCTGGAGGAA
GTCGGCGCCC ACCTGCTCAA GAAGCAGCTG CTCGATCCGC ACTGGTCCAA GAACCAGGCC
GATGTGGTGG CGCTGGAGCG CGCCACGCTC TACGGCCTGG TGGTCTACAA CGGCCGGCGC
ATGAGCTATG GCCGAATCGA CCCGCAGTCC GCGCGCGAGA TCTTCATCCG CCAGGCCCTG
GTGGAGGGGC AGTGGGATAC GCGCTGGCAC TTCCTGCCCG CCAACCTCAA GCTGGTGCGC
AAGGTCGAGG AGCTGGAGCA CAAGAGCCGC CGCCAGGACG TGCTGGTCGA TGACGAGCTG
ATCTACGCCT TCTACGACCA GCAGATCCCC AAGGACGTGT TCAGCGGCGC CACCTTCGAC
CATTGGTTCC GCGAGGCGGC CAAGGAAAAC GCCGACCTGC TGCGCCTGTC GCGCGACGAG
CTGATGCGCC ACGAGGCGGC CGGCATCACC ACCCAGGCCT TTCCCAAGGT GGTCAAGCTC
GGCGGCGTGG ACTGCACGGC CAGCTACCTG CACAGCCCCG GCGACGCGCG CGACGGCATC
ACCGTCACCG TGCCGCTGTT CGTGCTCAAC CAGGTCAGCG ACGAGCGCGT GGAATGGCTG
GTGCCCGGCA TGCTCAAGGA CAAGCTCCAG GCCCTGCTCA AGAGCCTGCC GCAGCGCCCG
CGCAGCCGCT TCGTGCCCCT GCCCGAAAGC GCCCAGCGCC TGGCCGAACT CTTCACCACG
CCCGAGCGCT GGGGCCAGGG ATCGCTGATC GATGCCCTGC TCAAGCAGGT GCGCGACGAG
ACCTCGCTGG ACGTCAAGCG CGCCGACTTC AAGCTGGACA TGCTCAGCCC GCACCTGTTC
ATGAACTTCC GAATCACGGA CGAGCATGGA CGCCAGCTGG GCCAGGGCCG CAACCTGGGC
GCGCTCAAGG CCGAACTGGG CGCCAAGGCG CGCGGCGCCT TCCAGGCGCT GGCCGCGTTG
AAGGTGGCGT CGGTCACGGA GGCCCCTGCA CCCGCTGCCA ACGCTGCCAC CGCGCCCGAA
ACTGGGAGGA AGCCAGCGCC CGCTGCCAAG GCGGAAAAGC CCGACCAGGC CACGCCTGCC
AGGAATGCCA AGCCCAGCCA GCCCGCCGAC AGCCGCTACA AGGAATGGAG CTTTGGCGAG
CTGCCCGAGC TGATGGAGAT CGGCCGGGGC GGGCAGACGC TGATCGGCTT CCCTGCGCTC
ATCGACCATG GCGATGCCGT CGGCATCGAG GTCTTCGACG AGCCCGAGGT TGCGGCCGCA
CGCCACCGCG TGGGCCTGCG CCGCCTGTTC GCGCTGCAGA TCCGCGACGC GCTCAAGTAC
CTGGAAAAGA ACATTCCAGA CCTGCAGAAG ATGGCCGTCG CCTACATGCC GCTGGGCACG
CAGGAGGAAC TGCGCGAGCA GATCATCGAC GTGGCCATAG ACCGCGCCTT CCTGCAGGAG
CCGCTGCCCA CCAACGACGC GCAGTTCAAG CAGCGCGTGC AGGACGGACG CGGCCGGCTG
ACGCTGATCG CCAACGAGGT GGCTCGCATG GCCTCCACCA TCCTGGTCGA GTACGCGGCG
GCGCAGCGCA AGATCAAGGA CACCAAGAAC GCGCCTGACG CCACGGCCGA CGCCGCCCAG
CAATTGCAGC GCCTGGTGCC CAAGAACTTC ATCGCGGCCG CGCCCTGGAC CCAGTTGCAG
CATTACGCGC GCTACCTCAA GGCCATCACC AGCCGCCTGG ACAAGTACCG CGCCGACCCT
GCGCGTGACG CCAGCCGCCT GACCGAGCTG CGCCCGCTGG AGCAGCGCTA CTGGCGACTG
GTGGCCGAGC GCAAGGGCCA CATCGATGCG CGCATGCAGG AGTACCGCTG GATGCTGGAG
GAGCTGCGCG TGAGCTTCTT CGCCCAGGAG CTGCGCACGC CGTACCCGGT CAGCATCAAG
CGGCTGGACA AGGTCTGGCA GCAGCTGCAG AACTAG
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| Protein sequence | MRGFSCGRHR AGVWKSAAAW RRRHGAGIIQ PLMPLKISFP ESLPVSARRE EIMEAMDRHQ
VIIVCGETGS GKTTQLPKIA LALGRGKVNA TPDDKGQVRG HLIGHTQPRR IAASSVAKRI
AEELNTPLGD VVGYKVRFQD RLSKDASVKL MTDGILLAET QTDPLLKAYD TLIIDEAHER
SLNIDFLLGY IKQILPRRPD LKVVVTSATI DAERFSRHFE GPKGPAPVIM VSGRTYPVEM
RWRPFEEKRD HDLNDAIAEG VDELWAGGVS GDILVFLPGE REIREAADHL RKHLAQQPVL
RHAEVLPLFS RLSQAEQDRI FDSHTGRRIV LATNVAETSL TVPGIRYVID AGTARVKRYS
FRSKVEQLLV EPISQAAANQ RAGRCGRVAN GICIRLYDEA DFGTRARFTD PEILRSSLAG
VILRMKSLGL GDVVNFPFLE APSGRAIADG YQLLGELGAV DERGELLPMG RELSRLPLDP
RVGRMILEAR TRGAVAEVLV IASALSVQDV RDRPLEAQQQ ADQQHAKFDD EKSEFSGYLR
LWKWLQDARG GKVVAKSRKE MATAQAPAAK PSARNAAFLP VAQRSGGQSV AAPAAEALAA
FHPQDTGPGT DDEPSHKLSN RQWEQLLRQN FINIRRVREW RDIHSQLLTV VNEHKWKINT
EPAGYDAVHL SMLSGLLGNL GYKGDESDAY LGARGIRFYP HPGAHLSKKP GRWIVAAELV
ETSRLYGRGI AAIDPQWLEE VGAHLLKKQL LDPHWSKNQA DVVALERATL YGLVVYNGRR
MSYGRIDPQS AREIFIRQAL VEGQWDTRWH FLPANLKLVR KVEELEHKSR RQDVLVDDEL
IYAFYDQQIP KDVFSGATFD HWFREAAKEN ADLLRLSRDE LMRHEAAGIT TQAFPKVVKL
GGVDCTASYL HSPGDARDGI TVTVPLFVLN QVSDERVEWL VPGMLKDKLQ ALLKSLPQRP
RSRFVPLPES AQRLAELFTT PERWGQGSLI DALLKQVRDE TSLDVKRADF KLDMLSPHLF
MNFRITDEHG RQLGQGRNLG ALKAELGAKA RGAFQALAAL KVASVTEAPA PAANAATAPE
TGRKPAPAAK AEKPDQATPA RNAKPSQPAD SRYKEWSFGE LPELMEIGRG GQTLIGFPAL
IDHGDAVGIE VFDEPEVAAA RHRVGLRRLF ALQIRDALKY LEKNIPDLQK MAVAYMPLGT
QEELREQIID VAIDRAFLQE PLPTNDAQFK QRVQDGRGRL TLIANEVARM ASTILVEYAA
AQRKIKDTKN APDATADAAQ QLQRLVPKNF IAAAPWTQLQ HYARYLKAIT SRLDKYRADP
ARDASRLTEL RPLEQRYWRL VAERKGHIDA RMQEYRWMLE ELRVSFFAQE LRTPYPVSIK
RLDKVWQQLQ N
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