| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_4534 |
|---|
| Symbol | |
|---|
| ID | 5750122 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Delftia acidovorans SPH-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010002 |
|---|
| Strand | - |
|---|
| Start bp | 4986096 |
|---|
| End bp | 4987925 |
|---|
| Gene Length | 1830 bp |
|---|
| Protein Length | 609 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 641299635 |
|---|
| Product | X-Pro dipeptidyl-peptidase domain-containing protein |
|---|
| Protein accession | YP_001565548 |
|---|
| Protein GI | 160899966 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2936] Predicted acyl esterases |
|---|
| TIGRFAM ID | [TIGR00976] putative hydrolase, CocE/NonD family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.19075 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 46 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGACTT TTCGCCATTC CCGCGCGTGG CTCGGCGCGG CCGGCATCGC CACCCTTGCC
CTGGGCCTCG CGGCCTGCGG CGGGGGCTCT TCGGGCAGCA CCAACCCCGG GCCGCGCATC
TGGGGCTACA TCCAGCTGCC TGACGGCAAC AAGATGCGCT ATTCGGTGGT CTTCCCCAAG
GGGCCGGGGC CTTTTCCCGT GCTGATGGAG TACGACGGCT ACGGATCGGG CTCGGTCACG
GACCAGACCA CCCAGGAATG GACCAAGGAA GGCTATGCCG TGATGGGCCT GAACGTGCCC
GGCACGGGCT GCTCCACGGG CGAGAACCAG TGGGCCGACG CCTCCGTGGG CGCGGCCGGG
GCGCATGCGG TGGAGTGGGC GGCGCGCCAG GCGTGGTCCA CAGGCAAGGT GGGCATGGTG
GGCTATTCGT ACTCGGGCTA CGACCAGCTG TGGGTGGCGG CCCAGCGTCC GCCCAGCCTC
AAGGCGATTG CTCCTGGCAA GAACGTGGCC GATCCCTACC GGGACGTGGC CTATCCGGGC
GGCATCCAGA ACATCGGCTT TCCCGCCAAC TGGTGGCGGC AGTTCCCCGC GATATGGCGC
AAGGCCGCCG ACGATGCCAG GGCGCTGGAT GGCGATACCG GATGCGCCCA GGTCGTGGAG
GACAACATCC GCAAGATCCA GCGCCCTGAC CTGGACATGG CGCGCTGGCT GGACGAGGAC
CGCTTCTTCG GCGCCCGCTA CGCGCTCAAG AGCGCCATGA ACTCCACGCA CCGCATCGAC
ATCCCCACGC TGGGCACCCA GTCCTGGCAG GACGAGCAGG TGGGCACGCG CATGGGCTAC
TACGAGGACA GCATCGCCCC GGACAAGATG TGGCTGATCA GCTCCAACGG CGACCACCAC
ACCGACAACG CCCCCTTTCT GCGCGAGACC ATGAAGCGCT TTTATGCGCG CTTTCTCAAG
GGCGAGAGCA ATGGCTTCGA GCACACGCCG CGCGTGCTGC TGGCGCAGGA AATGCAGTGG
ATGAACGGTG GGGGCGACTA TGGGCAGCTG CGTCCCTCGG CCGTGGCCAG CTTTGACCGG
CTGCCCGTGC GCGTCACGCC CATGACGCTG TGGCTGCAGC CTGGCGGCGG GCTGGGCGAT
GCGCCGCCGC AGGCCGAGCG CCAGTCGGCC AGCTACCGCT ACCCGCTGCC GGGCGCCGAG
GCCAACCATC CCGACGCGGA CACCGAGTCC GGCGCGGGCC AATGGACGGC CAGCCCCGCC
GGGCAGGGCC TGCTGCGCTT CACCACGGCC CCGCTGCCGC GCGCGCTGAG CTTTTATGGC
GAGGCCTCGC TGGACCTGTG GCTCAGCGCC ACGGCCGGCG ACACCGATGT GCAGGTCACC
GTCTCGGAGG TGCGTCCCGA CGGCCAGGAG ATGTTCGTGC AGCGTGGCTG GCTGCGTGCC
TCCATGCGCG CGCTGGACGG CCAGCGCTCC ACCGCCTTGC GGCCCTGGGG CGATTTCACC
GAGGCCGCCG TGCGCCCGCT GCGCCCCGGC GAGCCCACGC TGATGCGCGT GGAAATCCAG
AAATTCGCCC ATGTGTTCCG CGCGGGCTCC AGCCTGCGCG TGACCCTGGA CACGCCTTCG
CAGACCGGGT ACTGGGCCTT CGACCATCTG TCCACGCCTT CGACCAACAC CGTCTGGCTG
GACCGCAGCC GGCCCTCGAA GATCGTGCTG GGCCACATCG CCTATGCCCA TGAGCGGCAG
CTGCCGGACT GCCGGCGCAT GCTGCGCCAG CCCTGCAGGC CCAACGAGGA GGCCGTTCCT
TCGGGCGTGG GCCCCCTGCC GCCGCTGTGA
|
|---|
| Protein sequence | MMTFRHSRAW LGAAGIATLA LGLAACGGGS SGSTNPGPRI WGYIQLPDGN KMRYSVVFPK
GPGPFPVLME YDGYGSGSVT DQTTQEWTKE GYAVMGLNVP GTGCSTGENQ WADASVGAAG
AHAVEWAARQ AWSTGKVGMV GYSYSGYDQL WVAAQRPPSL KAIAPGKNVA DPYRDVAYPG
GIQNIGFPAN WWRQFPAIWR KAADDARALD GDTGCAQVVE DNIRKIQRPD LDMARWLDED
RFFGARYALK SAMNSTHRID IPTLGTQSWQ DEQVGTRMGY YEDSIAPDKM WLISSNGDHH
TDNAPFLRET MKRFYARFLK GESNGFEHTP RVLLAQEMQW MNGGGDYGQL RPSAVASFDR
LPVRVTPMTL WLQPGGGLGD APPQAERQSA SYRYPLPGAE ANHPDADTES GAGQWTASPA
GQGLLRFTTA PLPRALSFYG EASLDLWLSA TAGDTDVQVT VSEVRPDGQE MFVQRGWLRA
SMRALDGQRS TALRPWGDFT EAAVRPLRPG EPTLMRVEIQ KFAHVFRAGS SLRVTLDTPS
QTGYWAFDHL STPSTNTVWL DRSRPSKIVL GHIAYAHERQ LPDCRRMLRQ PCRPNEEAVP
SGVGPLPPL
|
|---|
| |