| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_4267 |
|---|
| Symbol | |
|---|
| ID | 5749855 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Delftia acidovorans SPH-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010002 |
|---|
| Strand | + |
|---|
| Start bp | 4670709 |
|---|
| End bp | 4671251 |
|---|
| Gene Length | 543 bp |
|---|
| Protein Length | 180 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 641299370 |
|---|
| Product | LuxR family transcriptional regulator |
|---|
| Protein accession | YP_001565283 |
|---|
| Protein GI | 160899701 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG4566] Response regulator |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.130529 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 37 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATATAG ATTACCGGCT GGCGTTCGAA GCCGCCCCCG TCGGCCTCGT GATCTCGCGC
AATCGCACCA TGATCGACTG CAACCGCCAG GTCTGCGAGA TGTTCGAGGC CTCGCGCGAG
GTGCTGATCG GCCAGACCTT CCAGATCCTC TACCCCAGCG CCGACGAGTA CGAGCGGCTG
GGCGCGCGCA TCGCGCCCAT TCTCAACGCC CGGGGTTTCT ACTCGGACAA CCGCATCATG
AAGCGCGCCA ACGGCGAAAC GTTCTGGTGC CATGTCACGG GCCGCACGCT GGACCGCAGC
GACCCGCACG CATCGGGCAT CTGGAGCTTC GAGGACCTCA GCGCCCACCG TCCCGTCAAG
GCCGAGCTCA CGGGGCGCGA GCGCGAGGTG GCCGCCCGCC TGCTGGAGGG GCTTACCTCC
AAGGAAATCG GCCGCGCCCT GGCCATCAGC CACCGCACGG TGGAGATCTA CCGCGCACGG
CTGATGCGCA AGTACGGCGC CTCCACGGCC GCCGACCTGG TCCACAAGCT GGTCTCTGGC
TGA
|
|---|
| Protein sequence | MDIDYRLAFE AAPVGLVISR NRTMIDCNRQ VCEMFEASRE VLIGQTFQIL YPSADEYERL
GARIAPILNA RGFYSDNRIM KRANGETFWC HVTGRTLDRS DPHASGIWSF EDLSAHRPVK
AELTGREREV AARLLEGLTS KEIGRALAIS HRTVEIYRAR LMRKYGASTA ADLVHKLVSG
|
|---|
| |