| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_4251 |
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| Symbol | |
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| ID | 5749839 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Delftia acidovorans SPH-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010002 |
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| Strand | - |
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| Start bp | 4652529 |
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| End bp | 4653446 |
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| Gene Length | 918 bp |
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| Protein Length | 305 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 641299354 |
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| Product | pseudouridine synthase |
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| Protein accession | YP_001565267 |
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| Protein GI | 160899685 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.00270285 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 0.0267319 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCACAACG CCCACGACCC CAAGGTTCTT CCCATACGCG ACGGCGTCAG CCCCAGCTGC
GTGGTGCTGC CCAGCCAGGG CGGCGGGTTG CTGATCGATT TTCTGGCCGA GCGCCTGCCG
GCCGTGGCGC GCGAAGACTG GCTGCGGCGC CTGGCGCTGC GCGAGGTGGT GGACGAGCAT
GGCCGCGCCG CCGATGCAGG CACGGCCTTT GCGCCGGGCC TGCGCTACTA CTACTACCGC
GAGCTGCAGG CCGAGCCGCC CATTCCCTTC GAGGCCGAGG TCCTCCACCG CGACGCGCAT
CTGCTGGTGG CCGACAAGCC GCATTTCCTG CCCGTGGTGC CGGCCGGCAA GTACCTGCAG
CAGACGCTGC TGGTGAGGCT CAAGCGCGAG TTCGACCTGC CCGAGCTGTC GCCCATCCAC
CGCATCGACC GCGACACGGC GGGGCTGGTG GTGTTTTCGG TGCAGCGCGC CACGCGCGGC
ATCTACCAGG CGCTGTTCCG CGACCGCGCC ATCCACAAGA CCTACGAGGC CGTGGCCCCC
TGGCGCGAGG ACGTGGTTTT CCCGCGCACG CATGAAAGCC GCATGGAAGA AAGCGGCCAT
TTCTTTCGCA TGCACGAGGT GGCCGGCACA CCCAACACCC GCACCCACAT GCAGGTGCTG
GAGCAGCACG GCCGCTGGGC GCGCTACCGG CTGGAGCCCG AAAGCGGCAA GCGCCACCAG
CTGCGCGTGC ACATGGCCGC CCTGGGACTG CCGCTGTGGG GCGACGGCTT CTATCCCGAA
GTGCATGACA TGCCCGAGGG CGACTACTCG CGCCCGCTGC AGCTGCTGGC GCGCAGCCTG
GCCTTCACCG ATCCTCTGGA CGGCCAGTCG CGGCGCTTTG ACAGCCGCCG CCAGCTGCTG
CCGCTGACCG ACCTGTAG
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| Protein sequence | MHNAHDPKVL PIRDGVSPSC VVLPSQGGGL LIDFLAERLP AVAREDWLRR LALREVVDEH
GRAADAGTAF APGLRYYYYR ELQAEPPIPF EAEVLHRDAH LLVADKPHFL PVVPAGKYLQ
QTLLVRLKRE FDLPELSPIH RIDRDTAGLV VFSVQRATRG IYQALFRDRA IHKTYEAVAP
WREDVVFPRT HESRMEESGH FFRMHEVAGT PNTRTHMQVL EQHGRWARYR LEPESGKRHQ
LRVHMAALGL PLWGDGFYPE VHDMPEGDYS RPLQLLARSL AFTDPLDGQS RRFDSRRQLL
PLTDL
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