Gene Daci_4080 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDaci_4080 
Symbol 
ID5749667 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDelftia acidovorans SPH-1 
KingdomBacteria 
Replicon accessionNC_010002 
Strand
Start bp4486261 
End bp4489635 
Gene Length3375 bp 
Protein Length1124 aa 
Translation table11 
GC content58% 
IMG OID641299182 
Producthypothetical protein 
Protein accessionYP_001565096 
Protein GI160899514 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.292091 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value0.032057 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCCAAGA AAGACGGCAA GATCGTCTAT GACGCCCGTG ACCCCGAGTT CCAGGACGAC 
AACGATAAAT TCCTGGCCGG CTGCCGAATT TACAAGGGTG ATGAGCAGCA ACTGCCCGAC
CCAGACCTCG AAGCTATTCA CGGCGCAGGC GAAGTGCCCG CGTATCGCGG AAGCTCATAC
ATTGTTTTCA TTGACGACGA TGTGACAGAC CGTCGCGGGT CTATTCCTCA ATACGAGTTC
GTTGTTGGTC GTGCTGAGGC AAACCGATTG GGAAATCCCG GGGACCCGAT CCCATCCGAA
GGCAGATATG TTGTTCAGGG CACTACTGGG GGAGGCGATC TTGCTTCGGC AAGACTACCC
GGTAGTTCTA TGGATACCTC TGTAAATAAC ACGTACTTTA TCGGGTGGTA TGTTGAGCCA
ACATTTGGGC AGCCGGCTGT TAATGCGACT TTCTATATAG AGATAAACGG CCTAGAGGTC
TACAATTTTT CAGGAGATGC TTCTGCAGAT AATAGGCTGT ACCATTGCAT TCAATTTCGA
CATCAAAACA GATCCGATAT TTGCGTTGTT GGAATGAGGT GTACTCCTCC TTCTGGAGGG
CAATTCCATT TAACATGGCA GGCAATTGAT TCAACAAAGA TATATACACC TGCAAATTCT
GCTGATGTAG TTCTGTCAGG CGACCCGCTT TATGGGTTAT TTCTTGATGA AGACGAGAAA
TTATTCACGA TGCACATGGA TATCCCTCAG TGCCCGCCGG AATGGTCATG GGGCGCAAAT
GTGCTGACTG AAGAGGCTGT CGAGGCTGGC GGGACAACGG TGAAAATTTC TCCAGTGCCA
TTGCATGAGA TAGTGACTTC CATCAGTGAG CGCTGCAACG TTGGGCCGGA GAATTACGAC
ACGTCCGAGC TTGTTGATAT GGTGGACGGA TTTGTTATGG CCAGTGCTGG CTATAGTGGA
GCAGACGCTA TCAATAGCCT GCGGGCGCCG TATTTCTTCG ACTGCCCAGA ATATGGCGGA
AAGATCTGGT ATCACAAGCG AGGTAAAGCA TCTGTCGCTG AAATAACCAT GGCTGACATG
GTTGAAGAGC CTGACGATAG TGAGCGGCAA GCGCAAATTG AGTATCCGAG GAAGCTGCAC
CTGACGTTTC AAAGTGCTGC CGTCAATTAC CAGACAGCGC AAGCAACGAG TGAGCGGGTC
TCTCCTGATG TGCGCGTCAC TGGAGAATCG GCGATGCAGG TTGCTGTGGT GATGACCTCG
GAGCTTGCCG CACAGAAAGC GGCCATGCTG CACAAAGTGT CCTGGTCCGA GGCAGAGGGC
GAGGTCAAAT TCTCGCTGCC GGATTCTTGG CTGCGCCTTG TGCCAGGCGA TTGCGTTGTG
CTCAAGCCGC GCGACACGGC GCGGCGCGTG CGCATCGACG GGATCGAAAT GTCGGCTGGG
GTGATGCAGA TTACTGGGCA TGTGGACCGC CGCAGCGCTT ATGCATCAAC TGTTGGATAC
GTGCCGCTGC CGGAGCCCAC AAAGCCCCCT TCAAGCGTTG TAGGCGACAC CGTGCTGGCC
GTGCTGGACG TGCCACTGCT GCGAGATGAC GATGACGCCC TCTACTACTA CGCCGCAGTC
ACTGGCGACC GCTCTGCATG GCGCGGCGCC CAGGTGCAAC GCAGCCTGGA TGGCGGAGCA
TCCTATGTCG ATGCTCTGGG CATCAGCTTC CCTGCAACGA TGGGCCGGCT GCGCGCCGAA
CTGCCCAGTG CGTCCCCCTG GTACACAGAC AGCACAAACG TGATCGACGT GGACCTGATC
CGCGACGGCG ACAGCCTGGA CAGCGTGACT GCGGCCCAGT TCCTGCAGCG TGCAGGCGCC
GTGGCGCTGC AACTGGCAGA CGGGTCTTGG GAGGTCGCAC AGTACCGCGA TGCAGAGCAT
GTCAGTGGCT TGCGCTACCG ACTGAGCACA TTGCATCGGG GGCAGCTCAA TACCGTGCCA
GGGGCGCACG CGGCTGGCGC GATGCTGGTG CTGCTTGATG ACGTGAGCCG CATATCTGCG
CAATCGGCAT GGCTGAGCCG CGTCTTGACG CATAGAGCTC CAAGTTTTGG CGGAGCCGTG
GAGACAGCTA CACCTCAATC CATGACGTAT GCAGGCCGTG CGCAACGTGA GTGGCCTGTT
GCATCGCTGC GCATCGCCGC GACTGGTGGC CCGGTGGGCG GCAGCATCGT TGCCAGTTGG
GCGCCGCGTC ATCGACTCGG GACAGACATA CTGCCTGTGG CGAGCCAGTA TTTCAGGGGA
TTTAGGGTGT ACGCGACCGA TGCTGGTGGG CTGTCAATGA CAGCCGATGT GACGGCTCAG
ACGCATACCC TACAACTCGG CGGAATGACA TGGCCAATCC GGGTGCATGT GGCTGCCCTT
AATGCGATCA CAGGCGCAGG CCCGTGGCGC TGGGTCAGCA CAGATGGTAC GAGCGGTGAG
GGCGATGGAC CGCCTGAGGA GGATCCTGGT GGTGAGACGC CCGTGGGCGA TGGAACGTTC
CAGCGCGGCA TTGCGATGTA CGGATCTGCG CGTGCAGGAG CCTATGGGCA GCTCATGGGC
GGAGATCTGT TCGCCGCCCA AAACTCTGGC GCATCCTGGC AGTTGTTCAA GCTGCGTGCA
GACACTCTGG AAGTGATCAG GGCAGCGTAT GCGGGCCCGT TCCTGTTCAC GGTTATCAAT
GACGGCGCGA GCCTATACGG CGGAAGCGAT GGCCTTGTGC GCAAATGGGA TGCTGATCTC
AACGAGACAG CCCAGGCTCA AGTCGGGTTC ACTGGAGATG CCCAGGGCCT GGCTCTCTGC
GGCGGTAGCC TGTGGGTGTC GGTGCCTTAT GAGCCGGCTG TCAAAAAGCT CAATCCCTCT
ACGCTTGCGG TGCAGGCCAC TGTGTCCGGG ATACGCATCA ACAGCCTGGT CACTGATGGG
TCATATCTGT ACGGCGCGAG CCGTGCAGAC AACTGCATAT ACAAGCTCGA CGGGTCCACT
GGAGCGCTTG TGGCCACGTT CCCCACTGCC GGCTACCCGG CTGATCTTGT GGTCCACGGC
GGAAAACTCT GGGTGATCTG CCTTCACGAC CTGCCGGTGC GTCTCTACAA GCACGACGCT
GGCACTGGTG CGAAAGAGGC ATTTGAGCTG GAAGTGACAT CGACGCCTGG ACGGCTGGCA
ATTACGGGCG ATGTGCTGGG TGTTGGCGGC CGCGTGAGCT TCGCCGTCAA CACGCTCACG
GATTCCGTGA TCGGCAGTTT CTCGATACCG CTGGACAACC CAAATCAGGT GCAGCCGCCC
ACTGCATCGC TCATCACGCC CACGCGCTTT GTCGCGGGGG GATTTGACTG GACTGCTTAC
TACGACTTGA TATGA
 
Protein sequence
MAKKDGKIVY DARDPEFQDD NDKFLAGCRI YKGDEQQLPD PDLEAIHGAG EVPAYRGSSY 
IVFIDDDVTD RRGSIPQYEF VVGRAEANRL GNPGDPIPSE GRYVVQGTTG GGDLASARLP
GSSMDTSVNN TYFIGWYVEP TFGQPAVNAT FYIEINGLEV YNFSGDASAD NRLYHCIQFR
HQNRSDICVV GMRCTPPSGG QFHLTWQAID STKIYTPANS ADVVLSGDPL YGLFLDEDEK
LFTMHMDIPQ CPPEWSWGAN VLTEEAVEAG GTTVKISPVP LHEIVTSISE RCNVGPENYD
TSELVDMVDG FVMASAGYSG ADAINSLRAP YFFDCPEYGG KIWYHKRGKA SVAEITMADM
VEEPDDSERQ AQIEYPRKLH LTFQSAAVNY QTAQATSERV SPDVRVTGES AMQVAVVMTS
ELAAQKAAML HKVSWSEAEG EVKFSLPDSW LRLVPGDCVV LKPRDTARRV RIDGIEMSAG
VMQITGHVDR RSAYASTVGY VPLPEPTKPP SSVVGDTVLA VLDVPLLRDD DDALYYYAAV
TGDRSAWRGA QVQRSLDGGA SYVDALGISF PATMGRLRAE LPSASPWYTD STNVIDVDLI
RDGDSLDSVT AAQFLQRAGA VALQLADGSW EVAQYRDAEH VSGLRYRLST LHRGQLNTVP
GAHAAGAMLV LLDDVSRISA QSAWLSRVLT HRAPSFGGAV ETATPQSMTY AGRAQREWPV
ASLRIAATGG PVGGSIVASW APRHRLGTDI LPVASQYFRG FRVYATDAGG LSMTADVTAQ
THTLQLGGMT WPIRVHVAAL NAITGAGPWR WVSTDGTSGE GDGPPEEDPG GETPVGDGTF
QRGIAMYGSA RAGAYGQLMG GDLFAAQNSG ASWQLFKLRA DTLEVIRAAY AGPFLFTVIN
DGASLYGGSD GLVRKWDADL NETAQAQVGF TGDAQGLALC GGSLWVSVPY EPAVKKLNPS
TLAVQATVSG IRINSLVTDG SYLYGASRAD NCIYKLDGST GALVATFPTA GYPADLVVHG
GKLWVICLHD LPVRLYKHDA GTGAKEAFEL EVTSTPGRLA ITGDVLGVGG RVSFAVNTLT
DSVIGSFSIP LDNPNQVQPP TASLITPTRF VAGGFDWTAY YDLI