| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_4009 |
|---|
| Symbol | |
|---|
| ID | 5749596 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Delftia acidovorans SPH-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010002 |
|---|
| Strand | - |
|---|
| Start bp | 4417484 |
|---|
| End bp | 4418350 |
|---|
| Gene Length | 867 bp |
|---|
| Protein Length | 288 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 641299111 |
|---|
| Product | LuxR family transcriptional regulator |
|---|
| Protein accession | YP_001565025 |
|---|
| Protein GI | 160899443 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2771] DNA-binding HTH domain-containing proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 34 |
|---|
| Fosmid unclonability p-value | 0.676622 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCACTG ACACAGGGCG CAGCCATTGG CTGCTGGCGC CTGCCTCCGC CAGCGACGCC
AGCCTGCCCG TGCCCCTGGG CGATGTGACG GCGCTGCTGG AGCAGGTGGG CCGCTCCAGC
GCCAGCAGCG ACGAGGTGGC CGGGCAGTTG CTGCATTTGC TGGGCCGGCA CGTGCCGCTG
GCGCAGTGCA CCATCTTCTC GTTCCAGGGC CGATCACGTC CGCGCATCGT GGGTTTTGGC
GACCGGGCAC GCACGGGGGC GCTGCCCATG ATTTCGCAGG ACTACAGCGA GCGCTTCTAT
CCACTCGACG GTGCGCAGCG CGTGATGCAG GCGGAACTTG CGCGGCAGCA GCGCGACCCC
CAGGCTCCCG CGCGCGTGTG GCTGCACCGC CAGCGCCCCT GCGATGTCAG CCATCCCGAG
TACCGCCATG TCTGCTATGG GTTGCCGCGC CTGGTGGAGC GGCTCTCGCT GCTGACCTTG
CAGCCTGGCG CACGGTGGCT GGCGGTGAAC CTGTACCGGG GCGAGGAGCA CGGCTGCCTT
GATGCGCAGT CCATCGCACG CATCGAAGCC TTTGTGCCCC TGGTCATGCA GGCCATGCGC
CTGCACTATG CGGGCCAGGC GCTGCAGGAC GATCTGGCGG GGCTGGTGCT GGCGCGCCTG
GCAGGGCGCT TTGCCCATCT CACGCAGCGC GATCTGGACG TGGTGCGCTG CGTGATCGAG
GGGCTTGATG CCGAGCGGCT GGCGCAGCGC CTGGGCATCA CCGTGTCCAG CGCGCGAACC
TATCTCAAGC GGGTCTGCGC CAAACTGGGC GTGCAGGGGC AGCGTGAGCT GTTTGCCTTG
TTGATGGCGC CCGAAGCGCT GTCCTGA
|
|---|
| Protein sequence | MSTDTGRSHW LLAPASASDA SLPVPLGDVT ALLEQVGRSS ASSDEVAGQL LHLLGRHVPL
AQCTIFSFQG RSRPRIVGFG DRARTGALPM ISQDYSERFY PLDGAQRVMQ AELARQQRDP
QAPARVWLHR QRPCDVSHPE YRHVCYGLPR LVERLSLLTL QPGARWLAVN LYRGEEHGCL
DAQSIARIEA FVPLVMQAMR LHYAGQALQD DLAGLVLARL AGRFAHLTQR DLDVVRCVIE
GLDAERLAQR LGITVSSART YLKRVCAKLG VQGQRELFAL LMAPEALS
|
|---|
| |