| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_3885 |
|---|
| Symbol | |
|---|
| ID | 5749468 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Delftia acidovorans SPH-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010002 |
|---|
| Strand | - |
|---|
| Start bp | 4278246 |
|---|
| End bp | 4280162 |
|---|
| Gene Length | 1917 bp |
|---|
| Protein Length | 638 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 641298983 |
|---|
| Product | AMP-dependent synthetase and ligase |
|---|
| Protein accession | YP_001564901 |
|---|
| Protein GI | 160899319 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.186226 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 0.147677 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCATGA GTCCTATGCC TGCGCAATCC ATGTTCCGGC CTCTGCGGGC CGTTTGCAGC
CTGGCCGATG TCGAAGCCAT CGAAAGCCGG CCCATGGCGC AGCTGATCAC CGCGGCTTCG
GTCTACGACC TCTTTTGCAA CTCCGCGCGT GAGCACGGCC AGGGCAGGGC GCTGAGCTTT
CTGCCCCAGG CCGGCAGCGT TCATGACGCC CGGCACCTGA GCTATGCCGA ACTGCTGGGC
AAGATCCACC AGACGGCCAA CGCCCTGCAT GCGCTGGGCA TGGGCGCCAG CGACACGGTG
GCCATCCTGC TGCCCGGCTG CATGGAGTAC CACTTTGCGC TGTGGGGCGG CGAGGCGGCG
GGCATCGTGC AGCCCATCAA TCCGCTGCTG AGTGCCGAGA AGATCTCTGC CCTGATGCGG
ACCACGGGCG CGCGCTTTCT GATCGCCTGG GCGGACGAGG ACGATGCCGG AATCCGCGAG
AAAGTCACGG CGCTGGATGC GGACCTGGCG CATGTGCTCT GGGTCTCGCA TGAAGGCCGG
GTTCCCCAGG GGGATGGACA GCGCTGGCCC GCCTGCGATC TGCATGCCGC CCTGGCCGCC
CAGCCCTCCG ACCGGCTGGT GAGCGGGCGC CAGCCCCAGG CCGGCGACGT GGCGGCCTAT
TTCCATACCG GGGGCACCAC GGGCGCGCCC AAGATTGCCG TGCAGACGCA TGGCGCCCAG
GTCTACACCG CCTGGGCCAG CGTGCAGATG CAGGGCCTGA ACACGGCCGA CCGCACCATC
AACGGCTACC CGCTGTTCCA TGTGGCCGGA GTGCTGCCGG GCTCGCTGGC CTGCTTCTCG
GCCGGAGCCC ACGTCATCAT TCCGACCACC GGTCTGTTTC GCAACAAGGC CGTGATTGCC
GGCTTCTGGC GCATGGCGGC ACAGTGGAAG CCCACGCTGA TGTCGGCCGT GCCCACGGTG
CTGGCCGCGC TGGTGGAGGT GCCGCTGCAG GGGGCTGATG TGTCCTCCAT CCGCTACTTC
CGCACGGGCG CCGCGCCGCT GTCGCCCGAG GTGGCGGCGC GCTTCAAGGC GCACAGCGGT
TTCCATGTGC ACGAGAGCCT GGGCATGACC GAGATGACGG GCATCTCCAC CATCACGCCG
CCCGGCCTGC ACGCGGCGGC GGGCCATGTG GGCCTGCGCC TGCCGTTTGC GCGCCTGGCC
GTGCGCTGCA TGGGGCCGGA CGGCAGGCCA TCAGGGCAGG AAGCCGCGCC CGGCGAAACC
GGCATGGTGG TGTTCCAGTC GCCCAACCTG TTTTCCGGGT ACCTGGGTGG CATTGAGCCG
TCCAGCTACC TCACCGATGA CGGCTGGCTG ATCACGGGGG ACCTGGGCTC GGTCGGCGAC
GATGGCCTGC TGCGGCTGCG CGGGCGTTCC AAGGACGTCA TCATCCGCAG CGGCCACAAC
ATCGATCCGC AGGTGATAGA GCAGGCGCTG GAGCGCCATC CCGCCGTCAA GGCCTGCGCC
GCCGTGGGCG CACCCGATGC CTATGCGGGC GAGGTGCCTG TGGCCTTTGT CGCGCTCCAG
CCCGGCGCTC ATGCCGATGA GACCGAACTG CTGGCCTTTG CCGCAGCCGG CGTGGACGAA
GCGCCTGCGC GCCCGCGCTA TGTGCGCATC ATCGATGCGC TGCCCACCAC CAACGTGGGC
AAGGTCTACA AGCCGCGCCT GCGCAGCATG GCTGCGGAAA TCTACGCTCG CACCCTGGTG
GCCCAGGCGC ATGAGCGCAT GGGCCTGCCG CTGCCGCCCG CGGCCAGCAC CACGCATGCG
GAAGGCGAGG GCTTTGTGCT GCGCCCGGCC AGGGCGGCTG ACCGGAGCCC TTGGGAGCAG
GCTGCCGAGG CGCTGGCCTT CACGGGCGAG CCGGTGCGCA TCGAGGATGC CGCCTGA
|
|---|
| Protein sequence | MAMSPMPAQS MFRPLRAVCS LADVEAIESR PMAQLITAAS VYDLFCNSAR EHGQGRALSF
LPQAGSVHDA RHLSYAELLG KIHQTANALH ALGMGASDTV AILLPGCMEY HFALWGGEAA
GIVQPINPLL SAEKISALMR TTGARFLIAW ADEDDAGIRE KVTALDADLA HVLWVSHEGR
VPQGDGQRWP ACDLHAALAA QPSDRLVSGR QPQAGDVAAY FHTGGTTGAP KIAVQTHGAQ
VYTAWASVQM QGLNTADRTI NGYPLFHVAG VLPGSLACFS AGAHVIIPTT GLFRNKAVIA
GFWRMAAQWK PTLMSAVPTV LAALVEVPLQ GADVSSIRYF RTGAAPLSPE VAARFKAHSG
FHVHESLGMT EMTGISTITP PGLHAAAGHV GLRLPFARLA VRCMGPDGRP SGQEAAPGET
GMVVFQSPNL FSGYLGGIEP SSYLTDDGWL ITGDLGSVGD DGLLRLRGRS KDVIIRSGHN
IDPQVIEQAL ERHPAVKACA AVGAPDAYAG EVPVAFVALQ PGAHADETEL LAFAAAGVDE
APARPRYVRI IDALPTTNVG KVYKPRLRSM AAEIYARTLV AQAHERMGLP LPPAASTTHA
EGEGFVLRPA RAADRSPWEQ AAEALAFTGE PVRIEDAA
|
|---|
| |