| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_3865 |
|---|
| Symbol | |
|---|
| ID | 5749448 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Delftia acidovorans SPH-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010002 |
|---|
| Strand | + |
|---|
| Start bp | 4259434 |
|---|
| End bp | 4261725 |
|---|
| Gene Length | 2292 bp |
|---|
| Protein Length | 763 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 76% |
|---|
| IMG OID | 641298963 |
|---|
| Product | peptidase S41 |
|---|
| Protein accession | YP_001564881 |
|---|
| Protein GI | 160899299 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0793] Periplasmic protease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.0264679 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 38 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGGGC GCCGTCTTCC ACGCGCCACC ACGGCAGTGA TTGCAGCCGC GCTGCTGGCG
GCCCCAGCCG CGCAGGCGCT GGACCTGGGC GCCATCGGCC AGGCTGCCGA CACCGTGCAG
CGGGCCTCGG GCGCCGCCAC GGCCGGCCAG CAGGCGCTGG AGGCCGGCCG CAGCGCAGCC
AGCACGGCCA CCAACGCGGC CACCGGTGCC GCCAGCGAGG CCCGTGCCTG GTGGGATCGC
AACCAGGCCC AGCCCGAGGC GGCACAGTCG CCGCCCTCCG GCGCCGCCCC CGTGCAGGAC
GACCAGGGCG GCCCACGCCG CGTCATGGCC GTGCTGGGCG ACGCCTGGAC GGACAGCGCC
CGGCGCGGCC AGGCCGTGGT CGCGCTCATG GACCAGGGCC CCTACCTCGT GCAGCGCCAG
GCCGCCCATG TGGCGCCGGC CAAGTCGCAA TGGCTGGCCC TGCCGCGCGG CGACAGCACC
GGCGTGGCCA TCGAACTGCC CAGCGACCCC GACGGCACGA CCTATGACCT GTCCACCGGC
CGCGCGCGCC CCGGTGGCCG GGGCGTGCGC ATCTTCGCCC TGTCCGTCCA CGCCGACGTG
CCCCAGCGCG CGGGCCGGCG CAGCCTCGAC GCCATAGAGC AGCACGCCAT GCTGCGCGCC
AGCTCGGTGC GCACCGAATG GCCGCGCCAA AGCGGCGACA TCCTGGAGCC CACGGGCGGC
AAGCTGCTGG TCTGGGCCAG CGATGCCACT CAGCGCTTCC CTTCCGGCTT TGGCGCCGAC
GGGCGCCTGT TCACCGCCGA CGACCCCATG GTCACCCTGC CGCGCGGCTA CACCGTGGTC
ACGCTGGAGC CTCAGGGCCT GCGCTTCGAC CGCGCCCGGG AAATCGCCCT GGCCTTCCAC
GCCGTCCAGC CCGCGCAGGA CATCGACCTG TCCCGCCTGG GTGCAGGCGA TGCGGCCCAG
GCCCTCATCG GCCTCATTGC CGAGCGCCAC CCGCTGGCCG CTGCCAGCGG CTTTGATGCC
GGCAAGCTGC GTGCCGACTA CGGCCAGCGC CTGCAGACCG CCGCCGAGCG CGGCGACAGC
GCCGCGCAGG CCCAGGCCCT GGCAGAAATG GGCCAGCGCC TGGGCGATGG CCAGTACCGC
GTTCTGCTGC CCGGCGGCCA GGCCTGGCCT GCCCGCACAG ACCGGGGCCT GTCCCCGCAG
CTGCTGGCAC GCGGCAGCGT CAACCTGCCC ATGCCGCGCA CCTGGCTGCG CGAGGACGGC
CGCATCGCCA TCACCAGCGT GGCGCCAGTC TCAGCCGCCG CCAAGGCGGG CCTGCAGCCC
GGCAGCGACA TCCTTGCCAT CGAAGGGGAA AGCCCGGCCC GCTACCTGGA CCGCATTGCC
CCCGCCTCGC TGCGCGCCGG TGCCGACGCC CGCCGCGCCG ACCTGCTGGC GCTGGACCTG
GGCACGCCCG CCACGCTGAG CCTGCGCACC GCAGCCGGCA CACCCCACAG CACATCCAGC
AGCGCATCCG GCAACCAGGA ACAGACCCTG CGCCTGGACG CCGCCCCCGC CGCAACCACG
GCCCTGCCTG CGGCCGAGCC CGCCCTCGCC TCCTTCCTGC TGCGCAGCGC CCAGGGCGGC
AACCTGGCCT ACATCGCCCT CGACAGCTTT GCCGACGGCG CCACCGGCCA GCTCAACCGC
TGGGAGGGCG CCTTGGCCGC CGCCACCCAG GCCAGGGTCA CGGGCCTGGT CATCGACCTG
CGCGCCCACC GGGGCGACGA CGCCTACCAG CTGGTGCCCC ACATGCTGGC CTCGCTCTAC
ACGCGCGACA AGCCGCTGCG CATGCAGGAC GCCGCCCAGC GCCTGTTCGA CCCCGCCGCC
CGCGTCTGGC GCAGCCGCGG CGGCCTGGGC CTGCCGGCCC AGCTGCCGCT GGCCGCCTCG
GGCACGCCCT TCACGGCCCC CGTCGCCGTG CTCACCGGCC CCGGCTGCGC CGGCCCCTGC
GAACTGTTCG CTGCCTGGCT GCAGCACAGC CAGCGTGCCG ACATCGTCGC CACCAGTGCC
ACGGCCGGCG CCACCGGCCC GGCAACGCGC GTGCACCTGC CGGCCGGCTT CATCGTGCAA
GTCCCCCTGC TCGCAGAAAC CGGCCCCGCT GGCGGCAACA ACACCGCCGC ACAAGCCCAA
GGCGTGACCC CGCGCCTGCG CGTGCCCGTG GACGCGGCCT TCACCGCCTC CGTCCAGGCC
GGCGGCGACC CGCTGCTGGA TGCCGCCGTG CTGCACCTGG ATCGCGCCCG CGCTGTGCAG
GCATCGCGCT AG
|
|---|
| Protein sequence | MSGRRLPRAT TAVIAAALLA APAAQALDLG AIGQAADTVQ RASGAATAGQ QALEAGRSAA
STATNAATGA ASEARAWWDR NQAQPEAAQS PPSGAAPVQD DQGGPRRVMA VLGDAWTDSA
RRGQAVVALM DQGPYLVQRQ AAHVAPAKSQ WLALPRGDST GVAIELPSDP DGTTYDLSTG
RARPGGRGVR IFALSVHADV PQRAGRRSLD AIEQHAMLRA SSVRTEWPRQ SGDILEPTGG
KLLVWASDAT QRFPSGFGAD GRLFTADDPM VTLPRGYTVV TLEPQGLRFD RAREIALAFH
AVQPAQDIDL SRLGAGDAAQ ALIGLIAERH PLAAASGFDA GKLRADYGQR LQTAAERGDS
AAQAQALAEM GQRLGDGQYR VLLPGGQAWP ARTDRGLSPQ LLARGSVNLP MPRTWLREDG
RIAITSVAPV SAAAKAGLQP GSDILAIEGE SPARYLDRIA PASLRAGADA RRADLLALDL
GTPATLSLRT AAGTPHSTSS SASGNQEQTL RLDAAPAATT ALPAAEPALA SFLLRSAQGG
NLAYIALDSF ADGATGQLNR WEGALAAATQ ARVTGLVIDL RAHRGDDAYQ LVPHMLASLY
TRDKPLRMQD AAQRLFDPAA RVWRSRGGLG LPAQLPLAAS GTPFTAPVAV LTGPGCAGPC
ELFAAWLQHS QRADIVATSA TAGATGPATR VHLPAGFIVQ VPLLAETGPA GGNNTAAQAQ
GVTPRLRVPV DAAFTASVQA GGDPLLDAAV LHLDRARAVQ ASR
|
|---|
| |