| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_3811 |
|---|
| Symbol | |
|---|
| ID | 5749394 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Delftia acidovorans SPH-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010002 |
|---|
| Strand | + |
|---|
| Start bp | 4191992 |
|---|
| End bp | 4193272 |
|---|
| Gene Length | 1281 bp |
|---|
| Protein Length | 426 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 641298909 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | YP_001564827 |
|---|
| Protein GI | 160899245 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 0.775008 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 0.310651 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACCTTT ACCTTGCCCC CTGGACCGGC CCGGCCACCA GCAATCCTTC GCATTTTCCC
GAGTTGGCAG GCCATTTGCG GGCCATGCGC GCCATGCTGG GCGTGGTGCG CCACGGCAGC
ACCACGCGGG CCGCCCAGGC TATGCATCTT TCTCAGCCAG CCGTGGCGCG CTCGGTGCTG
CAACTGGAAG AGGCCTGTGG CCTGCCGCTG TTCATGCGGG GCGCGCGCGG CATGATGCCG
ACCCCGCTGG GCAGCCAGCT GGCCGCCCGC ATCGAGTCCA TGCTCCAGCA TCTGGGCAGC
GGCGCGGCCG ACGCCCAGGC CGCCGCCACG CTGGCGGCCA GGCGCCCTCC CCTGCCCGAG
CGTTTTGCCG AGACCGTGCC TGCGGGCCAG CTGCGCGCCC TCATGGCCAT TGCCGACTGC
GGCAGCGAAT CCCTGGCCGC GCAGTGGCTG GGCCTGACGC AGCCCGCCGT GCATGCGGCG
CTGCAGGGGC TGGAAACCAG TCTGGGCATG CAGCTGTTCT ACAAGCTGGC CTTCGGCACG
CGGCTGACGC CGTCCGGCGA AGCGCTGCTG CGCCGTGTCA AGCTGGCCCT GGCCGAGGTG
CGCGGAATGG ACAGCGATAT TTCCGCCTGG CGCGGCGAGA TCCGGGGGCG CGTGGTGGTC
GGCGTGCTGC CGCTGTCGGT GGGAATCTTC CTGCCGCGCG CGGTCGACAG CCTGGCCGCC
AGCCACCCGG ACATCGAGGT CAGCATCGTG GACGGCACCT ACGAGAGCCT GGTGCAGCAC
CTGCTGAGCG CCGACATCGA CGCCATCGCC GGCGCCCTGC GCGCCGACAT GCCATCCGAT
GAGGTACGCC AGCTGCACCT GTTCGACGAT GACCTGGTCG TGGTGGCACC GGCCGGCCAT
GCCTGCCTGG ACCGCGGCCA GCTGGTTCTG GAGGATTTGC TGCAATGGCC CTGGGTGTCG
CCCCTGCCCG GCACGCCGGC CGACCGCGCC ATGGTCCAGC TGTTCCGCAG CCAGGGCCTG
GAGCCGCCGC GCGCCAGCCT GCGCGCCAGC AGCCCGACCA TGACGCTGGC CTTTGTGCTG
CAGACCGGCC GGCTGGCCCT GGCCTCGCGC GGACAGGCCC TGCAGGATGA CCACGGCGGC
CAGTTGTCCA TCGTGCCTGT GGACCTGCCT TCCACACGCA GGCGCATCGG GCTGGCCACG
CGTGCGCTGA GCACGGCATC GCAGGACCTG GAGCTGTTCA TGCAGGCCTG CCGGCGGGCC
GTGGGCGATC CGCCGGCCTA G
|
|---|
| Protein sequence | MNLYLAPWTG PATSNPSHFP ELAGHLRAMR AMLGVVRHGS TTRAAQAMHL SQPAVARSVL
QLEEACGLPL FMRGARGMMP TPLGSQLAAR IESMLQHLGS GAADAQAAAT LAARRPPLPE
RFAETVPAGQ LRALMAIADC GSESLAAQWL GLTQPAVHAA LQGLETSLGM QLFYKLAFGT
RLTPSGEALL RRVKLALAEV RGMDSDISAW RGEIRGRVVV GVLPLSVGIF LPRAVDSLAA
SHPDIEVSIV DGTYESLVQH LLSADIDAIA GALRADMPSD EVRQLHLFDD DLVVVAPAGH
ACLDRGQLVL EDLLQWPWVS PLPGTPADRA MVQLFRSQGL EPPRASLRAS SPTMTLAFVL
QTGRLALASR GQALQDDHGG QLSIVPVDLP STRRRIGLAT RALSTASQDL ELFMQACRRA
VGDPPA
|
|---|
| |