Gene Daci_3724 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDaci_3724 
Symbol 
ID5749307 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDelftia acidovorans SPH-1 
KingdomBacteria 
Replicon accessionNC_010002 
Strand
Start bp4092587 
End bp4093444 
Gene Length858 bp 
Protein Length285 aa 
Translation table11 
GC content51% 
IMG OID641298823 
ProductRhs family protein-like protein 
Protein accessionYP_001564741 
Protein GI160899159 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG3209] Rhs family protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.0108015 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value0.00111387 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGCCCATTG CGGCAGAGAT CAACGGGCGC TTGTACGCCA TCCACACGGA CCACCTGAAC 
ACTCCCAGGC GCCTGACCAA CCAGCAGGGG CAGGTGGCCT GGCAATGGCT GATCTCGGGG
TTTGGGGAAG TGCGTCCCAC CACGGGCGAC CGTGGCTACG GCCAGACGGT CAGCGGCCCC
AGCTATGCGC AGGCGGTGAA GTTCGATCTG CGGTATCCGG GGCAGGTGTT TGATGAAGAG
ACGGGGCTGT CGTACAACCT GCACCGGTAC TACGATGCGG CGACGGGGAG ATACATCCAG
GCGGACCCGA TCGGGTTGGA GGGTGGGTGG AATCGGTTTG GGTATGTGGG GGGCAACCCA
TTGATTTATG GTGATCCACA AGGATTGTTC AAGGTAATGT GGAAGGGAGA CAGCTTTGCA
ACCCCTCCAC CTCCGTGGGT GAAGCAGTTG CGTGAATATG GAAGAAAACT GGAAGATAAG
ATAGATTCAC TTTGCGCTTC TGATAGTTCT TATTTGAAGT CATATTTTGA TAAATGGACG
GTTGGTACTG ATGGTCGGCG TGGAAGTCCT ACAACGGATG TAGATAATTT TCATACAAAT
TTCACATCTG ACTATTTTGG GCTAACAAGT AACTTTATAA ATCCGTTCGA GAATAGTAGA
GAGGATCCTT ATGCGGTATT TTTACATGAA TTCCGTCATT TGATGAAGGG GAATCGCATA
CTTAGTCCAG GCGGATCAGA GTATTTGAAG TATAGATTAA ATGGAACAAC CGGAGGTTTG
GCTGTTGAAC TTGATGCCGA CTCATACGCT CTAGAGCTTT TTAAGGGGAA ATGCACATGC
GGAAGTTTGC GGCGTTAA
 
Protein sequence
MPIAAEINGR LYAIHTDHLN TPRRLTNQQG QVAWQWLISG FGEVRPTTGD RGYGQTVSGP 
SYAQAVKFDL RYPGQVFDEE TGLSYNLHRY YDAATGRYIQ ADPIGLEGGW NRFGYVGGNP
LIYGDPQGLF KVMWKGDSFA TPPPPWVKQL REYGRKLEDK IDSLCASDSS YLKSYFDKWT
VGTDGRRGSP TTDVDNFHTN FTSDYFGLTS NFINPFENSR EDPYAVFLHE FRHLMKGNRI
LSPGGSEYLK YRLNGTTGGL AVELDADSYA LELFKGKCTC GSLRR