| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_3411 |
|---|
| Symbol | |
|---|
| ID | 5748997 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Delftia acidovorans SPH-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010002 |
|---|
| Strand | - |
|---|
| Start bp | 3743035 |
|---|
| End bp | 3745149 |
|---|
| Gene Length | 2115 bp |
|---|
| Protein Length | 704 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 641298516 |
|---|
| Product | DNA-directed DNA polymerase |
|---|
| Protein accession | YP_001564434 |
|---|
| Protein GI | 160898852 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0749] DNA polymerase I - 3'-5' exonuclease and polymerase domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.0320259 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.00284905 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | GTGACCGCGC CGCTCTGGCT TGACCGCGAG ACGTGGTCCG AGCGCGATCT GAAAGAGGTC
GGCACCGCAC GATATGCCGA GGTGGCCGAG GACCTGCTGT TTGCTTATGC AATCGGGGAC
GGGCCGGCGC GCGTCTGGGA TTGCACGGCC GAAGAGATGC ACGACGAGCT GTACCACGCC
ATGGACGACG CAGACAGCGA GGCCTGGGCC CACAACGCAT TTTTCGACCG GACGATCCAC
AACGGCCCGG CGCAAGCGCA TCTGCCGCGC ATCGCGGACG AGCGCTGGCG GTGCAGCATG
GCGATGGCGC TGTCGCACGC CCTGCCCGGC GGGCTTGCCG ATCTGTGCCG GGTCTTGAAG
GTTCCAGCGG ACATGGCGAA GCTGGCCGAT GGCAAGAAGC TGGTGCGCCT GTTCACCCAG
CCCCAACCGG ACAATCGCAA AGTCCGGCGC GCCACCCGCC TGACTCACCC TGCCGAGTGG
GAGCGCTTCA AGCAGTACGC GGCCAACGAC ATCACGGCCA TGCGCGAGTG CGTGCGCCGC
ATGCCCGCCT GGAACTGGGA CGCTTCCGCC ATTGCCGAAT GGCACCTGGA TCAGCGGATC
AACCAGCGGG GGTTTCAGGT TGACCAGGCG CTGACACGCG CTGGCGCGCG AGCGGCTGTA
GAAGAGAAGG CCCGCATCGC CACGCGCTTC GCACAGCTGT CAGGCGGACA GTTCACCCCG
GGCCAGCGCG AGAAGTTCCG GGTGTACCTC GGCCAGCGCC TGGGCTACGA ACTCGACAAC
ACCCAGGCCG GTACATTCCA GGTGATGCTG CGAGACCCTG GCCTGCCGGC CGACGTGCGC
GAGATGATTG AGCTGGCCAT AGCCAGCAAC AAGACGAGCA CGGCGAAGTA CGCCGCCCTG
GACCCGGCCG TGTCGCCAGA CGGGCGCTTC CGTGGCGGCC TGCAGTTCGC CGGCGCCAGC
CGCACGCGGC GCTGGGCGGG CCGCCTCTTC CAGCCCCAGA ACCTGCCGTC CCGCGGACTG
CCATCGGCCG AGGTGATCGA GGACTATATC GAGCACCTCA AGATGGGCAC CCACGCCCTG
TTCTTCGACA ACCTGATGTT GCTGGGTGCT GCCGCCCTGC GCGGGTGCGT GGTGGCCGCC
CCCGGCAAGA AGCTCGTCGT GGCCGACCTG TCAAACATCG AGGGCCGGGT GCTGGCGTGG
ATCGCGCGGG AGGAATGGAA GCTTAAGGCC TTCCGCGAGT ACGACGCCGG CACCGGGCCG
GATCTCTACA ACATCACGGC GGTGAGCATC ATCGGCGGCG ACCCCTGGAA CGTAGAGAAG
AAAAACCGCA ACGCTTTCGG CAAGGTTCCC GACCTGGCAT CAGGCTACCA GGGGGGCGTG
GCGGGCTACC AAACGTTCGC CCGCAGCTAC GGTTTGAAGA TGGCCGACTT CTGGGACACC
ATTCAGCAGA TGGTGCCGGC CCAGCACGTG GCCAAGGCCT GGGAGAACCT GGCCTCCTGG
GGGCACCCGC AGTTGGAGTC TCTTGAAATC GACGAAATCG AGTGGGTGGC TAGCGAGACA
TGCAAGCTCG CCTGGCGTGC GCGGCACCCG GCCACAAGCA AGTTCTGGTA CGCCCTGGGT
GGCGCGGCCA AGGACGCTAT CCGCAACCCG GGCTCCGTGT TCACCGCCGG GCCCTTTATC
AAGCTGCGTA CCGTCTCGCA CCGCGGGCAG AAGTGGCTGG TTGTGCGCCT GCCCAGCGGC
CGGTTCCTCA CCTACTTCGA GCCGCACATT GTCGGCCAGG GGCGCGACGA GACCATCGCC
TACTGGGGCG AGGCGTCCGA GGAAGGCAAG ACCACGCGCC AGTGGGTGCG GGTCTTCACC
CACGGCGGCA AGATGACCGG CAACTGCTGC CAGACCATCG CGCGCGACAT CCTGGCGCCG
TCCATGGCCG TCGCCGAGAA CCGCGGCTAC TTGCCCGTGC TGTCGGTGCA TGACGAGGCC
TTGACCGAGG TGCCCGACAC CGACGACTTC ACGGCGGCCG GGCTCGTCGA GATCCTGGCC
ACCAACCCAG CATGGGCGCC AGACCTCCCG CTGGCCGCAG CCGGTTTCGA GGCCTACCGA
TACAAAAAAG ATTGA
|
|---|
| Protein sequence | MTAPLWLDRE TWSERDLKEV GTARYAEVAE DLLFAYAIGD GPARVWDCTA EEMHDELYHA
MDDADSEAWA HNAFFDRTIH NGPAQAHLPR IADERWRCSM AMALSHALPG GLADLCRVLK
VPADMAKLAD GKKLVRLFTQ PQPDNRKVRR ATRLTHPAEW ERFKQYAAND ITAMRECVRR
MPAWNWDASA IAEWHLDQRI NQRGFQVDQA LTRAGARAAV EEKARIATRF AQLSGGQFTP
GQREKFRVYL GQRLGYELDN TQAGTFQVML RDPGLPADVR EMIELAIASN KTSTAKYAAL
DPAVSPDGRF RGGLQFAGAS RTRRWAGRLF QPQNLPSRGL PSAEVIEDYI EHLKMGTHAL
FFDNLMLLGA AALRGCVVAA PGKKLVVADL SNIEGRVLAW IAREEWKLKA FREYDAGTGP
DLYNITAVSI IGGDPWNVEK KNRNAFGKVP DLASGYQGGV AGYQTFARSY GLKMADFWDT
IQQMVPAQHV AKAWENLASW GHPQLESLEI DEIEWVASET CKLAWRARHP ATSKFWYALG
GAAKDAIRNP GSVFTAGPFI KLRTVSHRGQ KWLVVRLPSG RFLTYFEPHI VGQGRDETIA
YWGEASEEGK TTRQWVRVFT HGGKMTGNCC QTIARDILAP SMAVAENRGY LPVLSVHDEA
LTEVPDTDDF TAAGLVEILA TNPAWAPDLP LAAAGFEAYR YKKD
|
|---|
| |