| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_3339 |
|---|
| Symbol | |
|---|
| ID | 5748924 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Delftia acidovorans SPH-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010002 |
|---|
| Strand | - |
|---|
| Start bp | 3663227 |
|---|
| End bp | 3664393 |
|---|
| Gene Length | 1167 bp |
|---|
| Protein Length | 388 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641298443 |
|---|
| Product | mandelate racemase/muconate lactonizing protein |
|---|
| Protein accession | YP_001564362 |
|---|
| Protein GI | 160898780 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[R] General function prediction only |
|---|
| COG ID | [COG4948] L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 0.613809 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 0.494649 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAATCG TCAACATCCT CGAATCCACC CGTCCCATCA AATCGGACAT CCGCAACGCC
TACATCGATT TCTCGAAGAT GACGCTCAGC CTGGTGGCCG TGGTCACGGA CGTGATCCGC
GACGGCCGCC CCGTCATCGG CTACGGCTTC AACTCCAACG GCCGCTACGG CCAGGGCGCG
CTGATGCGCG AGCGCTTCAT CCCGCGCGTG CTGGAGGCCG AGCCCGCCAG CCTGCTGGAC
GACAGCGGCG ACAACCTGGA CCCGCACAGG ATCTGGGCGC GCATGATGAT CAATGAAAAA
CCCGGCGGCC ACGGCGAGCG ATCGGTGGCC GTGGGCACCA TCGACATGGC CGTCTGGGAC
GCCACGGCAA AAATAGCGGG CAAGCCCCTG TACCAGCTGC TGGCCGAGCG CTACGGCAGC
GGCACGCCCA ACCCGCGCGT CTTCGTCTAT GCCGCTGGCG GCTACTACTA CCCCGGCAAG
GGCCTGGACG GCCTGCGCCG CGAGATGGAA AGCTACCTGG AGCGCGGCTA CTCGGTGGTG
AAGATGAAGA TCGGCGGCGC CTCGCTGGCC GAGGACTGCG AGCGCATCGA GTCCGTGCTC
AAAATTCTGG GCCCGGGCCA GCAGCTGGCC GTGGATGCCA ACGGCCGCTT CGACCTGGCC
ACCGCGCTCG ACTATGGCCG CGCCCTTGGC CAGTACCCGC TGTTCTGGTA CGAGGAAGCC
GGCGACCCGC TGGACTACGA ACTGCAGGCC CGCCTGGGCG AGGTCTACCA GGGTCCCATG
GCCACGGGCG AGAACCTGTT TTCCATGCAG GACGCGCGCA ACCTGATCCG CCACGGCGGC
ATGCGCCCGG ACCGCGACTG GCTGCAGTTC GACTGCGCGC TCAGCTACGG CCTGGTCGAG
TACCTGCGCA CGCTGGACAT GCTCAAGGCC CATGGCTGGT CGCCCAGCCG CTGCATTCCG
CACGGCGGCC ACCAGATGTC GCTGGCCATT GCCGCCGGCC TGGGCCTGGG CGGCAACGAA
AGCTACCCCG ACCTGTTCCA GCCCTATGGC GGCTTCCCCG ACGGCGTGAA GGTGGACAAC
GGCCACGTCA CCCTGCCGCC GCTGCCGGGC ATAGGCTTCG AGGGCAAGGC CGACCTGATC
GCCGAGATGC GCGCGCTGGC GGCCTGA
|
|---|
| Protein sequence | MKIVNILEST RPIKSDIRNA YIDFSKMTLS LVAVVTDVIR DGRPVIGYGF NSNGRYGQGA
LMRERFIPRV LEAEPASLLD DSGDNLDPHR IWARMMINEK PGGHGERSVA VGTIDMAVWD
ATAKIAGKPL YQLLAERYGS GTPNPRVFVY AAGGYYYPGK GLDGLRREME SYLERGYSVV
KMKIGGASLA EDCERIESVL KILGPGQQLA VDANGRFDLA TALDYGRALG QYPLFWYEEA
GDPLDYELQA RLGEVYQGPM ATGENLFSMQ DARNLIRHGG MRPDRDWLQF DCALSYGLVE
YLRTLDMLKA HGWSPSRCIP HGGHQMSLAI AAGLGLGGNE SYPDLFQPYG GFPDGVKVDN
GHVTLPPLPG IGFEGKADLI AEMRALAA
|
|---|
| |