| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_3164 |
|---|
| Symbol | |
|---|
| ID | 5748748 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Delftia acidovorans SPH-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010002 |
|---|
| Strand | + |
|---|
| Start bp | 3481235 |
|---|
| End bp | 3482224 |
|---|
| Gene Length | 990 bp |
|---|
| Protein Length | 329 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641298267 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | YP_001564187 |
|---|
| Protein GI | 160898605 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 0.674543 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.0000237032 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | TTGCCTGCGG CCGCGCGCAA GGCCGCGAAC AAGGCCGCGA ACAAGGCGGA CCGCCTGACC
TGCCGCTCTC AAGCCATGGA CATCAACCTC ATCCGCAATT TCGTAGAGAT CGTGGACGCG
CGCAGCCTCA GCGCTGCGGC GCGCAAGCGC GATATCACGC GCTCCAAGGT GAGCAAGGAG
CTCAAGGCGC TGGAGACCGC GCTGGGCGTG ACCCTGCTGC ACCGCACGAC GCGCAGCTTT
TTGCCGACGG CGGCGGGCGA GGTGCTGTAC GAGCATGGGC GCAGCATCAT CCAGGAGGTG
GAGGCGGCGC AGGGCGCCAT CGACGCGCTG CAGCATGTGG TGACCGGCTC GGTGCGGCTG
AGCATTCCCA CGGGCCTGGG CGAGCTGTAC CTGGCCGACA TGCTGCTGGC CTTCCAGAAG
CGTCACCCGC AGGTGCGCAT CCGCGTGCTG TTCTCCAACC GGGTGAGCGA TCCCATGAGC
GCCCAGGTGG ATGTGGCCGT GCGCGTGGCG CGCGACGTGC AGGAGCACCT GGTGGCGCGC
GACCTGGGGC CGGTGGGCTT TGGCCTGTAT GCCAGCAGCG CCTATGCCAA GGCGCGGCCG
TTCCACGACC CCGCCGAGAT TCCCCACGGC GTGCTGCTGA CGCCGCCCGG CGATGGCAAG
ACCTATGCCG TCTCGGTGAA AAAGGGGCAG CAGGAGATTG CACTCAAGTG CGAGCCCTGC
ATCACCAGCG AGCATTTCCC CTTCCTCAAG CAGTCCATGC TCCGGGGAAG CGGCGTGGCC
ACCTTGCCCA ACTACATGGT GATGGACGAG CTGCGATCGG GCGCGGTGCA GCGCGTGTGC
CCGGACTGGA CGGTGTCCGG CCTGGGCGAC AGGCTGTACA TCATCACGGC CGAGGACCGT
CGGCCCTCGC ATGCCGTCAA GGTGATGACC GAGTTCCTCA GGGCCAGCCT GCTGCGCTTC
GTGGAGCAGG CCGGGGAGCC CGGGCCTTAG
|
|---|
| Protein sequence | MPAAARKAAN KAANKADRLT CRSQAMDINL IRNFVEIVDA RSLSAAARKR DITRSKVSKE
LKALETALGV TLLHRTTRSF LPTAAGEVLY EHGRSIIQEV EAAQGAIDAL QHVVTGSVRL
SIPTGLGELY LADMLLAFQK RHPQVRIRVL FSNRVSDPMS AQVDVAVRVA RDVQEHLVAR
DLGPVGFGLY ASSAYAKARP FHDPAEIPHG VLLTPPGDGK TYAVSVKKGQ QEIALKCEPC
ITSEHFPFLK QSMLRGSGVA TLPNYMVMDE LRSGAVQRVC PDWTVSGLGD RLYIITAEDR
RPSHAVKVMT EFLRASLLRF VEQAGEPGP
|
|---|
| |