Gene Daci_3109 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDaci_3109 
Symbol 
ID5748693 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDelftia acidovorans SPH-1 
KingdomBacteria 
Replicon accessionNC_010002 
Strand+ 
Start bp3426304 
End bp3426921 
Gene Length618 bp 
Protein Length205 aa 
Translation table11 
GC content72% 
IMG OID641298212 
ProductTetR family transcriptional regulator 
Protein accessionYP_001564132 
Protein GI160898550 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.0137482 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones44 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGTGAGC AGGCTGTACC GGCTGTACGG GCTGTATCGA CTGCACAGGC TGCACGGCGC 
GGGCGCCCCT CGGCCGGGCG CTCGCTCAGC CGCGATCAGG TGCTGGACGC CGGGCTGGCC 
TTGCTAGAGG CCGTGGGCGC GCAGGGCTTT GGCCTGCGGC CGCTGGCGCG GCAGCTGGGC 
ATTACGCCCA TGTCGGTGAT CCACCATGTG GGCGACCAGC AGGAATTGAT GCGCAGCCTG 
GTGGAGCGCG TGCATGGCCA GCCGCTGGCC GAACCTCCGC CCGGGCTTGC GCCGGCGCAG 
CGCGTGCAGG CGCTGCTGGC GGGCTACATG GAGCGCGTGC GCCGCCATCC GGCGCTGACG 
GTGTGCATTC TGGGCGACCC GGCCCTGTTC ACCGATTCGC TGGCCGCCTT CACGCAGCGG 
CTGCGCGGCG AGGTGCAGCA GTGCGAGCCC AGCGATGGCG ATGCCGCCGT GCTGCTGGAC 
TTGCTGATCG ATTACACGCA TGGCCATGCA CTGGCGCTGG CCTTGTCGGG CGAGGGCGCG 
CAGGCATTGC ATGGCCGGTT CGAGCAGGGG TTGGCGCGGC TGCTGCGCCA GGGCTGGGAG 
CGGCAGCCCG GCCCGTGA
 
Protein sequence
MSEQAVPAVR AVSTAQAARR GRPSAGRSLS RDQVLDAGLA LLEAVGAQGF GLRPLARQLG 
ITPMSVIHHV GDQQELMRSL VERVHGQPLA EPPPGLAPAQ RVQALLAGYM ERVRRHPALT 
VCILGDPALF TDSLAAFTQR LRGEVQQCEP SDGDAAVLLD LLIDYTHGHA LALALSGEGA 
QALHGRFEQG LARLLRQGWE RQPGP