Gene Daci_3034 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDaci_3034 
Symbol 
ID5748618 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDelftia acidovorans SPH-1 
KingdomBacteria 
Replicon accessionNC_010002 
Strand
Start bp3336752 
End bp3337993 
Gene Length1242 bp 
Protein Length413 aa 
Translation table11 
GC content72% 
IMG OID641298137 
Productbeta-lactamase 
Protein accessionYP_001564057 
Protein GI160898475 
COG category[V] Defense mechanisms 
COG ID[COG1680] Beta-lactamase class C and other penicillin binding proteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.0396527 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones33 
Fosmid unclonability p-value0.941046 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACGATTG CCCTTTCTGC AGCGCCTTCA GCACCTGCTG CGCTGCCTGC AGCCCCGTTG 
AACTCGCCCC TGTCCGACCG CATCCAGGCC GTGGTCCGGC AGGCGCTTGA GGCGCAGCGC
CTGGTCGGCG CCGTGGTGCT GGTGGCGCGT GGCGGCGCGC TGGTCCACCG CCAGGCCGCA
GGCTGGGCCG ACCGCGAGCG CGGGCTGCCC ATGGCCGTGG ATGCGGTGTT CCGCCTGGCC
TCGGCCAGCA AGCCCATCGT CTCGGCTGCC GCGCTGGTGC TGGTGGCGCG GGGACTGCTG
GCGCTGGACG AGGGCGTGGA CCGCTGGCTG CCGCAGTTCC GGCCCCGGCT GGCCGATGGC
GGGCCCGCCC GCATCACCGT GCGGCAGCTT CTCAGCCACA CGGCGGGGCT GGGCTACCGC
TTCTTCGAGG CCGATGCACA AGGCCCCTAT GCGCGCGCGG GCGTATCGGA CGGCATGGAC
CGCCAGGCCA TCGGCCTGGC AGAGAACCTG GAGCGCATCG CCAGCGTGCC GCTGCTGTAC
GCGCCGGGCA CGGCCTGGGG CTACTCGCTG GCCACCGATG TACTGGGCGC CCTCATTGAA
CAGGTGCACG GCAGGCCGCT GGACCAGGCC GTGCGCGACC TTGTGACCGG GCCGCTGGGC
ATGACCGATA CCGGCTTTGC CGTCACCGAT GCGCTGGCCG TGCAGCGCGT GGCCAAGGCC
TATGTCAGCG ACGTGCCGCA GCCCCATCCG CTGGCCGAGG GCGAGACCGT GTCGCCCTTC
GAGGGGAGCA TCGGCATTGC CTTCAGCCCT TCGCGCATCT TTGACGCCCA GGCCTTTGCC
TCCGGCGGCG CCGGCATGGC GGGGACGGCG GGCGATTTCC TGCGGCTGCT GGAAGCCCTG
CGCCAGGGCG GCAACACCCT GCTGCCCGAC GCCCTGGTCG CCGAGATGGC GCGGGACCAG
ACCGGCGGGC TGGCCCTGCC CAACGCGCCG GGCTTCGGCT TTGGCCTGGG CTTTTCCGTG
CTGCGCGATG CGGCGCAGGC GGCATCGCCG GAGTCGGTGG GCACCTGGCG CTGGGGCGGG
GCCTACGGGC ATTCCTGGTT CGTCGACCGG GCGCAGGAGC TCAGCGTCGT GGCCTTCACC
AACACCTTGT ACGAGGGCAT GTCGGGGCGT TTCGTCAACG ATCTGCGCGA CGCGGTCTAC
GGGGTTTGTG AGGTCCAAGG GGCTTCGGGA GCGCCGCAAT GA
 
Protein sequence
MTIALSAAPS APAALPAAPL NSPLSDRIQA VVRQALEAQR LVGAVVLVAR GGALVHRQAA 
GWADRERGLP MAVDAVFRLA SASKPIVSAA ALVLVARGLL ALDEGVDRWL PQFRPRLADG
GPARITVRQL LSHTAGLGYR FFEADAQGPY ARAGVSDGMD RQAIGLAENL ERIASVPLLY
APGTAWGYSL ATDVLGALIE QVHGRPLDQA VRDLVTGPLG MTDTGFAVTD ALAVQRVAKA
YVSDVPQPHP LAEGETVSPF EGSIGIAFSP SRIFDAQAFA SGGAGMAGTA GDFLRLLEAL
RQGGNTLLPD ALVAEMARDQ TGGLALPNAP GFGFGLGFSV LRDAAQAASP ESVGTWRWGG
AYGHSWFVDR AQELSVVAFT NTLYEGMSGR FVNDLRDAVY GVCEVQGASG APQ