| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_2942 |
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| Symbol | |
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| ID | 5748524 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Delftia acidovorans SPH-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010002 |
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| Strand | - |
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| Start bp | 3232109 |
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| End bp | 3234976 |
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| Gene Length | 2868 bp |
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| Protein Length | 955 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 641298043 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_001563965 |
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| Protein GI | 160898383 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.297804 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 0.363556 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGCATC TCGCTCCCCT CGTTCGCCCT CTCACGCTGG CCGCGCTGCT GGGCGCCGGC
TGGAACACGC CGCCGGCCTG GCCGCAGGCC GTGGCGGCCG TCAAGGCCGA GGCGCCGCTC
AGGGGCCGCG CGTGGCAGCT GGCCAACCAG GCCTATGCCC ACTACCAGGC CGGCCGCTTT
GCACGGGCCG CGACCGCCGC CGCATCGGCC ATACAGCTGC GCCCCGACCT GCTGCGCCTG
CGCATGCTGC TGATCTACTC GCTGCAAAAG CAGGGCAAGA ACGAGGAAGC GCTCAAGGCC
ATCGCCTCGG CCCGCGCCGC CGGGCTGGAC GAGGCCACGC TGCAGCAGGC CGAAACCAAT
GTGCGGGCCG CAGCGGCAGG CGGGGCGGCG GGCGGGCCTG CGGGGGCCAC GGCTTCCGAG
GCCTACAACA AGGCCTTTCC CATCGCCACG CAGGCCTACA CCGACTACAA CGCCAAAAAC
TACGCGGACA GCGCGCGCAG GGCCGAGCAG GCCTTTCGCC TGGACCCCAG CCAGGGCCAG
TGGGCGCTGC TGTGGATAGG CGCGCTGGAG GCGCAGGAGC AACTGGGCGC CGCCATCGAG
GCCGCAGATG CCGCCCTGGC CCTGGACCCA CCCAACAAAA GCGACCTGGT GGCCAAGCGC
CAGACCCTGC GCCGCAGCCA GGCCGTGCTG CCGGCGCAAA AGGCCTACCA GGCGCTGATC
GCCAACAACC CGGCGCAGGC CGTGCCCTTT GCGCGCGAAG CCGTGGCGCT GGCGCCGGGA
ACGGCATCGC ACCGCCTGCT GCTGATCACC TCGCTGCTGC TGGCCGAGCA ATTGCCCGAT
GCGGAAAAAG CCGCAGACGA GGCGCTGGCG CAGGACAACG AAGACACAGC GGCGCTGGGC
ATGCGCGGCT ACATCCGCCA GCGCCAGGGC AAGACCGCAC AGGCCAACGA GGACTTCGAT
GCCGTGCTCA AGCAGGACTG GCTGGACGAA AAGCAGTCCG CCAACCTGCG CCTGATCGCG
GCCGACGCGG CCCTGGCCGC TGGCGACGCG GCACGCGCCC GCGCGCTGCT GGCGCCCATG
CCGGCACAGG ATGAATCCGT GGCCCGCCGC CTCAAGCAAG CCGATGACCT GCGCCCGGGC
CGCGACACGC CCATGGTGGC CGATACGCGC GGCGCCTCGC AGACCCTGGC CATGGCCGAC
TATCCGCCGC CCCTGCAGGA CTGCCGCGAC ACGCCCTACG GCACGGTCTG CGAGCTGCAG
CCTTCCGATG CCCAGGGCAC GGGCGGCCCC AGCGCCCAGG CCTATGCGGC CTACGCACGC
CAGGACTACA AGGCCGCCAT CGACCACGCG CGCACGGCCG TGGAGCAGGA CCCCGACAAC
CCGCAACTGC AAAAGCTGCT GACCACCACG CTGGCCGCAG GCGACCGCGA CCAGCAGGGC
CAGGCCCTGC TGCGGCTGGA CAAGTCCCTG TCCCTCACCC CCAACGACCC CCAGCTGCTG
ATGCAGCGCG GCTACCTGTA CTCGCGCCAG GAAGAGCCGG CCAAGGCGCT GCAGGACTTT
CGCGCGGCGC GCGCCACGGG CGAGGCGCCA GCGGGCGCCA TGCTGGACGA AGGCTATGCG
CTGGCCGGCA CCGGCGACAA CCGGGGCGCC GTGCGCACCT TCAAGGAAGC CATCGACCTG
GACGACGCCG GCACCGCCAA GCTCACGCCC GGCCAGCGCG AGAACGCACG CAGCGCCGTC
TCCGGCTACG CACGCGAGTG GGGCGCCATC GTCTCCATGG GCTACCGGGG TGCGCGGCCT
GCGGGGCGTG CGTTCTCGGA CGGCATCCTC ACCCAGGCGG GCGACGCCGT CTTCGGCACG
GCCGAGGCCT ACTGGCGCCC GTCCAACTTC CTGAACTCAT CGACGCGCAT CTTCGATGTC
TACGGGCGGC TGGGCAGCAC CTTGCACGAC GGCGGCGGCA CCACGCTGGG CCAGAGCGCC
ATCGACCCCT GCACCGGCCT GCCCATCAAT GTGCAGGCGG GCGACAACCG GGGCGTATCG
GGCCTGCCCA CCACCACGGG CTCGCTGGGC ATGCGCTTCA CGCCGTCCAC CAAGTACGCG
CTGACCTTCG GCATAGAGCG CCAGTTCAAC CTGGGCACGG CTACGCGCTC GGGCTTCATC
ACGCCTGAAT CGCCCCAGCT GCGCTGCCTG ATGAGCGGGC GCGATCCGCT CAACCCCACG
GGCCCGGCGC TGGGCAACCC GATATCGGCC AAGTACAGCG CGGGCGCAGG CCAGGGCGGC
TGGCTGGCCT ATGTCACCCA TGGCTTCTAC GAGGGAACGG GCCGGCGCAC GGACCGCTCC
AGCTGGTTCA CCATGGAGGG CTACAGCCAG GCCGGCTATG CCAACCAGAG CATGGCCTCG
CGCTTCACGC TGACCGACCA GACCAACGGC GCCCTGGTGG GCGACGGCTC GGGCCGCTAC
AAGCGCGAGC AATGGTTCTT CTCCACCGAG GCCCGCTTCG GCCGCAGCTT CCGTGCCGAC
GGCATCAACC AGGGGCTGGT GATCTTTCCG TTCGGCGTGG TCGCGGCCGA CTGGATCAAG
CAGAGGAACC GCGTCGATGT GCGCTCCCTG CAGGCCGCCC CGGGCGCCAC GCCCACCGCA
GCCCAGTTGG CCGCCCAGCA GGGGCAGACG CTGGCCCTGC AAGGCAATGG CAGCAGCTGG
TCCGCCAGCG CCGGCGTGGG CGTCAGCCTG CGCCAATGGT TTCGCGAAAG CCACTACAGC
ACGGCCCAGT CCTATGTGGA CTGGTCCATG CAGTACCGCT TCAACATCGG TGGCGGCCAA
GCCGACCGCG CCAAGGGCCT GTTCATGACG CTGACGCTGT CCTATTGA
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| Protein sequence | MKHLAPLVRP LTLAALLGAG WNTPPAWPQA VAAVKAEAPL RGRAWQLANQ AYAHYQAGRF
ARAATAAASA IQLRPDLLRL RMLLIYSLQK QGKNEEALKA IASARAAGLD EATLQQAETN
VRAAAAGGAA GGPAGATASE AYNKAFPIAT QAYTDYNAKN YADSARRAEQ AFRLDPSQGQ
WALLWIGALE AQEQLGAAIE AADAALALDP PNKSDLVAKR QTLRRSQAVL PAQKAYQALI
ANNPAQAVPF AREAVALAPG TASHRLLLIT SLLLAEQLPD AEKAADEALA QDNEDTAALG
MRGYIRQRQG KTAQANEDFD AVLKQDWLDE KQSANLRLIA ADAALAAGDA ARARALLAPM
PAQDESVARR LKQADDLRPG RDTPMVADTR GASQTLAMAD YPPPLQDCRD TPYGTVCELQ
PSDAQGTGGP SAQAYAAYAR QDYKAAIDHA RTAVEQDPDN PQLQKLLTTT LAAGDRDQQG
QALLRLDKSL SLTPNDPQLL MQRGYLYSRQ EEPAKALQDF RAARATGEAP AGAMLDEGYA
LAGTGDNRGA VRTFKEAIDL DDAGTAKLTP GQRENARSAV SGYAREWGAI VSMGYRGARP
AGRAFSDGIL TQAGDAVFGT AEAYWRPSNF LNSSTRIFDV YGRLGSTLHD GGGTTLGQSA
IDPCTGLPIN VQAGDNRGVS GLPTTTGSLG MRFTPSTKYA LTFGIERQFN LGTATRSGFI
TPESPQLRCL MSGRDPLNPT GPALGNPISA KYSAGAGQGG WLAYVTHGFY EGTGRRTDRS
SWFTMEGYSQ AGYANQSMAS RFTLTDQTNG ALVGDGSGRY KREQWFFSTE ARFGRSFRAD
GINQGLVIFP FGVVAADWIK QRNRVDVRSL QAAPGATPTA AQLAAQQGQT LALQGNGSSW
SASAGVGVSL RQWFRESHYS TAQSYVDWSM QYRFNIGGGQ ADRAKGLFMT LTLSY
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