| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_1909 |
|---|
| Symbol | |
|---|
| ID | 5747467 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Delftia acidovorans SPH-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010002 |
|---|
| Strand | - |
|---|
| Start bp | 2110953 |
|---|
| End bp | 2111954 |
|---|
| Gene Length | 1002 bp |
|---|
| Protein Length | 333 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 641296988 |
|---|
| Product | integrase family protein |
|---|
| Protein accession | YP_001562934 |
|---|
| Protein GI | 160897352 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG4974] Site-specific recombinase XerD |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 0.838759 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.00000212902 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCCGATCG TCCGTGATAA ATCGCGTGGT ACGTACGTCT TTGAATTTGA CCGCATCGTC
AACGGCGGGC GTATCCGCAT ACGAAAGCGC CTTCCTAAAG CTTGGACTTC GGCTCAAGCC
GACGAGTTCG AGCGCAAAGA GTCAGCGCGG ATCTACGCGG CCGCGAATGG CGTTGGTTCA
GAGGACAGAC TGATCACTGA CGCCATCGCT CTCTACGTCG CTGAGAGGGC GCCACTATTA
AAACAGGGGA AGAATGCCGC ACGCGAGATC CATCAGATCC ACTGGGCATT CAATGGAAAG
CCCATCAGTG CCTTAGCTGA AGTGTGCCGC GCCGTGGTCC AGAAGTCTGG CAAGTCACGG
TACGGCAAAG AAATGGCACC GGCCACGATC CGGGCGCGCA TCCGCTATTT GGTGGCAGCG
TGCCGCTACG CATGGAAGTA CCATGGGTTC GGCACTGCCG ACCCTGGCGC CCGGGTGATC
ACGCCCCAGG TGCGCAACGA ACGGCGGGTC TACATCGACC GCCGCGAGAT GCTCAAGATC
GCGCGCAAAA TCAGAAACCG CAAGGTGCGG CGCGTAATCC GCATAGCGTT CTACAGCGGG
ATGCGACTGG GGGAGATCCT ATCCGCCCGG GTGGAGGGTG GTCGGTGGCA CTTGGACGAT
ACGAAGAACG GGGAGCCGCG CATCGTCCCA ATTCACCCCC GAGTCTGGAC GGCAGCGCAC
AACACGTCGC GCAAGCCTGC AAAGATCACA GTGCAGTCGT ACTTCAGGGA AGCCGCCCGG
GCATTGGGAC ACAATGATCT GCACTTCCAC GATCTGCGGC ACTCCGCGGC GTCGGAGATG
ATCAACAACG ACATCGACCT CTACACGGTC GGCGCGGTGC TAGGGCATAA GGATCAGCGC
AGCAGTGCGC GCTATGCCCA CCTAGCGGTA AAACGACTCG ACTTGGCCAT CAAAAAGATA
GGGCAAAAAA CCCCCACCAC AGAGCGCAAA AAAGCCGCTT GA
|
|---|
| Protein sequence | MPIVRDKSRG TYVFEFDRIV NGGRIRIRKR LPKAWTSAQA DEFERKESAR IYAAANGVGS
EDRLITDAIA LYVAERAPLL KQGKNAAREI HQIHWAFNGK PISALAEVCR AVVQKSGKSR
YGKEMAPATI RARIRYLVAA CRYAWKYHGF GTADPGARVI TPQVRNERRV YIDRREMLKI
ARKIRNRKVR RVIRIAFYSG MRLGEILSAR VEGGRWHLDD TKNGEPRIVP IHPRVWTAAH
NTSRKPAKIT VQSYFREAAR ALGHNDLHFH DLRHSAASEM INNDIDLYTV GAVLGHKDQR
SSARYAHLAV KRLDLAIKKI GQKTPTTERK KAA
|
|---|
| |