| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_1789 |
|---|
| Symbol | |
|---|
| ID | 5747347 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Delftia acidovorans SPH-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010002 |
|---|
| Strand | - |
|---|
| Start bp | 1987688 |
|---|
| End bp | 1988866 |
|---|
| Gene Length | 1179 bp |
|---|
| Protein Length | 392 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 641296869 |
|---|
| Product | AraC family transcriptional regulator |
|---|
| Protein accession | YP_001562816 |
|---|
| Protein GI | 160897234 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG4977] Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.327521 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 0.830389 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCAGGCC GGGCTGGCCT GTGCAGCACA CGTTACGGGG GGCCGGGCCG CGCAGGCATC
CGGCAAGCGC AGGCACTGTC CCTGGCGCGC AGAAATTGGC TCCCGGGGAA TGGTCCGAAT
TGTGGGAGCG GGTGGTTTTT GCTACGTTCT GCCCAGCCTA TGGAACACGC CATGCACACA
CCGCTGCCGC TGCAGCGCTA CCGGCTTTTC GAGAGCCACG ACATGGACGA GGCCCGCGAA
AGCGTGGCGC GCGTCTTCTG TCCGCATGGC CTGGGCATGC TGCGCCCGCG CGCCGAGCTG
GACGCCTGCC ACCACAGCGC GCCGCTTTCC CGCAACGTCA GCCTGAACTA TGTGCAGTAC
GGTCCCGGCG TGCACATCGA GCCCGGCTAC CTGCGGGACT TCTTCCTGCT GCAGATTCCC
CTGCGCGGCA GTGCCGAGAT CCGCTGCGGC GCGCAGCAGG TGGATGCCAC GCCGCGCCTG
GCCTCCCTGC GCTCGCCGAC CGAGCCGCTG TCCATGCGCT GGGCCGACGA CAGCCCGCAC
CTGATCGTGC GCATGGCCCG CCCGGCCCTG GTGGCGCGGC TGGAGGCGCT GCTGCAGGCG
CCCGCAGGCC GGCCCCTGGT GTTCGATCTG GGCGTGCCGC TGGACCAGCC GGCGCTGGCA
CCGCTGGTGC ATTTCATCGA CTGCCTGCGG CACACGCTGG ATGCGGGCAA CGCCCTGCAG
GCCACACAGG CGCTGGCCCA GCATGCGGAG GAATACCTGC TGACCAGCCT GCTGATGTCG
GCCACGCACA GCCACAGCCG CGCACTGGCC GGGGACAGCC GGCGCAGCCT GCTGCCGCGC
GGCGTGCGCA AGGCCCAGGA GTACATGCAG GCCCATGCCG ACCAGCCCCT GTCGCTGGCC
GATGTCTGCC GCGAGGCCGG CTGCAGCGCG CGCACGCTGC AGGCCGCCTT CCGCCAGCAC
GCGGGCATGG GGCCCATGGA TTTCCTGCGC CAGCTGCGGC TGGACCGGGT GCGCGCCGAA
CTCCAGGCAG CCAAGGGCCC GGGCGCCGCA GCCGGCTCCG GCGTGCGCGA CGTGGCGCAG
AAATACGGCT TCCTGCACCT GGGCCACTTC GCGGCCCAGT ACCGCAGCCG CTTCGGCGAG
CTCCCGTCCG AGACGGCGAG CCGCCGCGTG CAGGCCTGA
|
|---|
| Protein sequence | MPGRAGLCST RYGGPGRAGI RQAQALSLAR RNWLPGNGPN CGSGWFLLRS AQPMEHAMHT
PLPLQRYRLF ESHDMDEARE SVARVFCPHG LGMLRPRAEL DACHHSAPLS RNVSLNYVQY
GPGVHIEPGY LRDFFLLQIP LRGSAEIRCG AQQVDATPRL ASLRSPTEPL SMRWADDSPH
LIVRMARPAL VARLEALLQA PAGRPLVFDL GVPLDQPALA PLVHFIDCLR HTLDAGNALQ
ATQALAQHAE EYLLTSLLMS ATHSHSRALA GDSRRSLLPR GVRKAQEYMQ AHADQPLSLA
DVCREAGCSA RTLQAAFRQH AGMGPMDFLR QLRLDRVRAE LQAAKGPGAA AGSGVRDVAQ
KYGFLHLGHF AAQYRSRFGE LPSETASRRV QA
|
|---|
| |