| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_1168 |
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| Symbol | |
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| ID | 5746723 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Delftia acidovorans SPH-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010002 |
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| Strand | + |
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| Start bp | 1298392 |
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| End bp | 1300167 |
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| Gene Length | 1776 bp |
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| Protein Length | 591 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 641296248 |
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| Product | pseudouridine synthase |
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| Protein accession | YP_001562198 |
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| Protein GI | 160896616 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
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| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 30 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 53 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTGTGGTG CGGAACATGG AGAGCCCGCC GGGGCGCAGG GCCGGGCGGC GGGGCTGGCA
AGGGGGCCCT GGCGGCCTGC CCGCAGGCCG CCCGATAGTC GCCCGATAGC CGAGCGCAAT
GCCCGTATTG GCCGCAGGGC GCAGCCGCTG CGGGCCTTGC CGCGCGACAA TGGCGGTCTA
ATGTCATCCC CTACTTCTTC CAAACCGTCC CGGCCCGGCG CCGACGAGGC GGCAGCGCCC
TCCGCGCGCC CTGTGCTGCG CCGCCCCGAA AAGCCACAGG CCGAGCCGGC TGGCGATGCC
CGCCGCCCTT CGGGTGGCGC GGGCAAATCT GCGGGCGCAC GCGGCGGCCC GCGCAGTGAC
CGCAACGACC GCAATGAACG TGGCGGCGAC CGTGGCGGCC GCAATGATCG CTACGAGCGC
TCCGACCGCC GTGATGCCCC CCCTCGCGGC GATGCCCGCG GTGCAGCACC CCGCGACGAC
GCCCGTGACC AGCGCCCGCG CAGCAGCGGT TTCGGCCGTG CCGAGGACCT GGACCGTTCC
CAGCCGCGTG GCGACTGGCG CGAACAGGGC GGCGGCGAAA ACCGTGCCCC GCGCGAGCAG
CGCGACATGC GCGATGCCCG TGATACGCGC GATGCCCGCC CCCCGCGCCC GCCCCGCCCG
GACGATCGCC GCGACCGGCC CTATGGCCAG CGCGATGAGC GTCCGCGTGA TGGTCAACGC
GATGGCCAAC GTGACGGCCA GCGCGACGGA CCCCGCGACG GCCCGCGTGA AGGTGGTTTC
CGCGACCGTC CCCGGGACGA CGCCCGCGGC CCCCGCCGTG ACGATGCGCG CGGACCGCGC
CGCGACGACG CCCGTGGTCC ACGCCGTGAT GACGCCCGTG GCCCGCGCCG CGACGAGGCG
CCCCAGGCCG AGCCCGCCTA CCGTCCGCTC AGCGGCATCC GCACCTACCG TCCCGCCGAC
GGTGGCGCCA GCCGCGAAAT CCCCGTCAAG CGTGCTCCCG AGCCGCTGCA GGAGCAGGTT
CCCGGTGGCG TGCGCATCAA CAAGCGCCTG GCCGATATGG GCCTGTGCTC GCGCCGCGAG
GCCGACGAGT GGGTGGACAA GGGCTGGGTC CGCGTCAATG GCGAACTCGC CGTGATGGGC
CAGAACGTGG TGGCGGCCGA CCGCATCACC GTCGAGCGCG AGGCGCGCGA GCGCCAGGAC
CAGCAGGTCA CCATCCTGAT CCACAAGCCC ATGGGCTATG TCAGCGGCCA GGCCGAGGAC
GGGCACGAGC CCGCCGTGGT CCTGGTCACG CCCCAGAACC ACTGGAACCA GGACACCAGC
CGCACGCGCT TCAACTTCGC GCAGCTCAAG GGCCTGGCGC CCTGCGGCCG GCTGGACATC
GACTCCGTGG GCCTGCTGGT CATGACCCAG GACGGCCGCG TGGCGCGCCA GATCATTGGC
GAAGATTCGG AGATGGACAA GGAGTACCTG GTGCGCGTGA CCTACGGTGA CCGCGACATC
GACGTGCAAT CCGTGTTCCC GGCCGAACAG CTGGCACGCC TGTGCCATGG CCTGTCGCTG
GACGGCGAGG CACTCAAGCC CGCCAAGGTG GACTGGCAGA ACCCCGAGCA GCTGCGCTTT
GTGCTGACCG AAGGCAAGAA GCGCCAGATC CGCCGCATGT GCGAACTGGT GGGCCTGCGT
GTGGTGGGCC TCAAGCGCAT CCGCATCGGC CGCGTGACGC TGGGCAATCT GCCTGTGGGC
CAGTGGCGCT ACCTGGGTGC ACACGAGAAT TTTTAG
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| Protein sequence | MCGAEHGEPA GAQGRAAGLA RGPWRPARRP PDSRPIAERN ARIGRRAQPL RALPRDNGGL
MSSPTSSKPS RPGADEAAAP SARPVLRRPE KPQAEPAGDA RRPSGGAGKS AGARGGPRSD
RNDRNERGGD RGGRNDRYER SDRRDAPPRG DARGAAPRDD ARDQRPRSSG FGRAEDLDRS
QPRGDWREQG GGENRAPREQ RDMRDARDTR DARPPRPPRP DDRRDRPYGQ RDERPRDGQR
DGQRDGQRDG PRDGPREGGF RDRPRDDARG PRRDDARGPR RDDARGPRRD DARGPRRDEA
PQAEPAYRPL SGIRTYRPAD GGASREIPVK RAPEPLQEQV PGGVRINKRL ADMGLCSRRE
ADEWVDKGWV RVNGELAVMG QNVVAADRIT VEREARERQD QQVTILIHKP MGYVSGQAED
GHEPAVVLVT PQNHWNQDTS RTRFNFAQLK GLAPCGRLDI DSVGLLVMTQ DGRVARQIIG
EDSEMDKEYL VRVTYGDRDI DVQSVFPAEQ LARLCHGLSL DGEALKPAKV DWQNPEQLRF
VLTEGKKRQI RRMCELVGLR VVGLKRIRIG RVTLGNLPVG QWRYLGAHEN F
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