| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_0958 |
|---|
| Symbol | |
|---|
| ID | 5746512 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Delftia acidovorans SPH-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010002 |
|---|
| Strand | + |
|---|
| Start bp | 1068373 |
|---|
| End bp | 1069170 |
|---|
| Gene Length | 798 bp |
|---|
| Protein Length | 265 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 641296038 |
|---|
| Product | short chain dehydrogenase |
|---|
| Protein accession | YP_001561989 |
|---|
| Protein GI | 160896407 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 38 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 52 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTTGATT CCCAACTCAA GGACACCACG GCCGTCGTCA CCGGCGGCTC TTCGGGCATT
GGCCTGGCCA CGGTCGATCT GCTGCTGTCG CAGGGCGCGC GTGTCGCCCT GTGCGGGCGC
AGCGCCGAAC GCCTGGAGCA GGCCGTGCAG CAACTGCGCG AACGCCATCC CGAGGCCCGG
CTGTTCGCCC AGGCCTGCGA CGTGCTCGAC GCTGCCCAGG TGCAGCAATT TGCGCGCGAC
AGCGAGGCTG CGCTGGGTCC GGCCTCCATC CTCGTGAACA ACGCGGGCCA GGGCCGGGTC
TCGACGTTTG CCAGCACCGA CGATGCGGCC TGGACCGAGG AGCTGCACCT GAAGTTCTTC
TCGGTGCTGC ATCCCACGCG CGCCTTTTTG CCGCAGCTCG AGCGCACGGC GCAGCCGGCC
ATCGTCTGCG TCAATTCGCT GCTGGCCTCG CAGCCCGAGC CGCACATGGT GGCCACCTCG
GCCGCGCGCG CCGGCCTCAA GAACCTGGTG CGCTCCATGG CCACCGAGTT CGCGCCCAAG
GGCGTGCGCG TCAACGGCAT CCTGGTCGGC CTGATCGAGT CCGGCCAGTG GCGCCGCCGC
TTCGAGGCGC GCGAGGACCG CAGCCAGGAC TGGAACGCCT GGAGCGCCGA CCTCGCCCGC
AAGAAGTCCA TTCCGCTGGG CCGCCTGGGC TCGCCCGACG AGGCCGCGCG CGCCATCTTC
TATCTCGCCA CGCCCCTGTC CTCCTACACG ACCGGCAGCC ACATCGACGT CTCCGGTGGC
CTTGCACGGC AAGCGTAG
|
|---|
| Protein sequence | MFDSQLKDTT AVVTGGSSGI GLATVDLLLS QGARVALCGR SAERLEQAVQ QLRERHPEAR
LFAQACDVLD AAQVQQFARD SEAALGPASI LVNNAGQGRV STFASTDDAA WTEELHLKFF
SVLHPTRAFL PQLERTAQPA IVCVNSLLAS QPEPHMVATS AARAGLKNLV RSMATEFAPK
GVRVNGILVG LIESGQWRRR FEAREDRSQD WNAWSADLAR KKSIPLGRLG SPDEAARAIF
YLATPLSSYT TGSHIDVSGG LARQA
|
|---|
| |