| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_0560 |
|---|
| Symbol | |
|---|
| ID | 5746103 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Delftia acidovorans SPH-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010002 |
|---|
| Strand | + |
|---|
| Start bp | 613551 |
|---|
| End bp | 615170 |
|---|
| Gene Length | 1620 bp |
|---|
| Protein Length | 539 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 641295629 |
|---|
| Product | glycosyltransferase |
|---|
| Protein accession | YP_001561591 |
|---|
| Protein GI | 160896009 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1807] 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 35 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 46 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAATCCT CCCCCTCTGC CCCGGCAGGC GTTCCCACGG GCGCGGCCCT GCTCTGGATG
GTGACGCTGG CCTGCCTGCT CTGGGCCCTG GTGTCCTGGC TGGCCAATGG CAATCTGGAC
GGCTACCACG ACATGCTGGA GAACTATGCC TGGGCCCAGC CGCTGCAGCT GGGCACGCAC
AAGCATCCGC CGTTCTTCGC CTGGGTGGTC GGCCTGTGGT TCATGGTGTT CCCGCAGAAC
GACGGTTTCT ATCGCCTGCT GTCCTATGCC AATGTGGGCG TGGGCATCTG GGGCGTCTAC
GTGCTGGGCA GGCGCCTGGG GCTGGCGCGC CTGGCGCCGC TGGGCGCGGC CCTGTTGCTG
TGGTGCTTTC CGTATACGAC GCTGGCCGGC AAGTTCAACG CCAACAGCCA GCTGCTGTCC
CTGTGGCCCT GGGCGGCGGC CCTGCTGCTG GCCAGCTGGC AGGAAAAGGG GGCGCGCGGC
GTGGCCTTCA GCGTGGCGCT GGGCGTGGTC TCGGCCGCCT GCATGCTCAG CAAGTACTAC
AGCGGCGTGT TCCTGGCCGG TTTCCTGCTG CCCATCTTCC TGGTGCGTGA AGGGCGCCAG
TGGCTGCTCA CTCCCCGGCC CTACGTGGCG CTGGCAGCCT TTGGCCTGGC GCTGGCGCCG
CATGTGGCCT GGATTGCCCA CCACCAGTGG GTGACGCTGG GCTATGCCAT GGACCAGGGC
GGCGGGCAGG TGGTATGGGG CTATGTGCTG CGCTTTGCGC TGGCGCCCAT CTTCTACTGG
CTGCCGGCCT GGCTGGCCGT GTGCCTGGTG TATGGCTTCA TGCAGGCCCG CCAGCAAGGC
GGCGGCTGGC TGCGCTGGAG TGCGCGTTTC CTGCGCCGCA GCTGGTGCTG GCAGGGGCGC
GGCGACACGC TGTTCTGGCT GGCCCTCATG CCCTGGCTTG CGACGCTGGG CTTTGGCGCC
ACCGGCGTGG TGGAGCTGTC CACGCCCTGG GCCATTCCCA TCGGCTATGC CTTCGTGCTG
CTGTGGCTGC GCAACCTGGA CGCCGAGGCG CCCGCCGTGA CGCAGGCCGC CCTGGCCGCG
CTGCGCCGCG CCTGGTGGCC TAGCCTGGCC GTGGTGCTGG TGATTGGCGT GGCCGCGGGT
TGGGGCAATG CGCGCAAGAG CAGCTCCGAC TACTACCGCC CTGCGGCCGA TGCGGCGCAG
GCCATCGTGC TGTCCTGGAA CCAGCGCCAC CCGCAGCAGC CGCTGCAGTG GGTGGGCGGC
GACTGGGCGG AAAACGCCAT GCTGTCCTTC TATGCCCAGC CGCATCTGCG CACCATTCCC
GGCCTGCCCG ACAGCGAATA TGCGCGCGTG CTGGCGCTGC CGGACTGGCG CCAGCAGCCC
GGGCTGCTGC TGTGCCCGCG CGGCCCGGTG GCCAGCGAGC CCGGCCCGAC CGCGAAATCG
CGCGACTGCG AGCAGCAGGC GCAGGCCTGG CTGGCGAAGC TGGGCCTGCC GCAGGAGGCG
CGTGTGCTCA CGGTGCAACG CTCGGGCTGG CGTTTTCCTC GGCCCAGTCC CTATGCCTAT
GCGGTTTTTG ACGTGTTGCC GCGCGCGGGC AGCCAGCCCG CTGACAATGC TGGTCTATGA
|
|---|
| Protein sequence | MKSSPSAPAG VPTGAALLWM VTLACLLWAL VSWLANGNLD GYHDMLENYA WAQPLQLGTH
KHPPFFAWVV GLWFMVFPQN DGFYRLLSYA NVGVGIWGVY VLGRRLGLAR LAPLGAALLL
WCFPYTTLAG KFNANSQLLS LWPWAAALLL ASWQEKGARG VAFSVALGVV SAACMLSKYY
SGVFLAGFLL PIFLVREGRQ WLLTPRPYVA LAAFGLALAP HVAWIAHHQW VTLGYAMDQG
GGQVVWGYVL RFALAPIFYW LPAWLAVCLV YGFMQARQQG GGWLRWSARF LRRSWCWQGR
GDTLFWLALM PWLATLGFGA TGVVELSTPW AIPIGYAFVL LWLRNLDAEA PAVTQAALAA
LRRAWWPSLA VVLVIGVAAG WGNARKSSSD YYRPAADAAQ AIVLSWNQRH PQQPLQWVGG
DWAENAMLSF YAQPHLRTIP GLPDSEYARV LALPDWRQQP GLLLCPRGPV ASEPGPTAKS
RDCEQQAQAW LAKLGLPQEA RVLTVQRSGW RFPRPSPYAY AVFDVLPRAG SQPADNAGL
|
|---|
| |