| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_0535 |
|---|
| Symbol | |
|---|
| ID | 5746078 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Delftia acidovorans SPH-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010002 |
|---|
| Strand | - |
|---|
| Start bp | 588667 |
|---|
| End bp | 589407 |
|---|
| Gene Length | 741 bp |
|---|
| Protein Length | 246 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641295604 |
|---|
| Product | XRE family transcriptional regulator |
|---|
| Protein accession | YP_001561566 |
|---|
| Protein GI | 160895984 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 34 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.003613 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAGCACCA CTGCCGACCT CGTCATCGCC CTCAAGAAGG AACTCAAGGC CGCCCAGATG
ACCTATGCCG ACCTGGCGCG CGCCCTGGGC ATGGCCGAGT CCAGCGTCAA GCGCATGCTG
GCCAAGGGCG ACATGCCGCT GTCGCGCATC GATGCCATCT GCCGCGCGCT GAGCCTGGAT
TTCGCCGACC TGGCGCGCCG CGTGGCCGAC AGCCAGCCGC TGCTGCAGGA GATGACGCCC
GAGCAGGAGA ACGCCGTGGT CGCCGACCGC AAGCTGCTGC TGATGGCCAT CTGCGTGCTC
AGCCAGTGGA CGCTGGAGCA GATCGTGGCC ACCTACCGCA TGACCGAGGC CGAAGGCATC
CGCTACCTGG CCCAGCTGGA CCGCATCGGC ATCATCGAGC TGCGCCCCGG CAACCGCTAC
CGGCTGCGCC TGGCCAAGAC CTTCCGCTGG CGCGCACGCG GGCCGGTGAT GGAGTACTTC
CGCGAGAACG CCGTGCTCGA CTACTTCGGC GGCGGCTTCG ACCAGCCCGG CGAGGGCATG
CTGATGGTGC ACGGCTCCAT CGGCCGGCAT CTGGCGCCCA GCTTCGTGGA ACGCATACAG
CGGCTGGCCC ATGACTTCTC CCAGCAGCAC CTGCAGGACC AGCGCCTGCC GCCGGGCCAG
CGCGAGGGCT ACACCCTGGT GCTGGCCATG CGCAGCTGGG AATTCACTGC GTTCACGGCG
CTCCGAAGAG GCACTGTCTG A
|
|---|
| Protein sequence | MSTTADLVIA LKKELKAAQM TYADLARALG MAESSVKRML AKGDMPLSRI DAICRALSLD
FADLARRVAD SQPLLQEMTP EQENAVVADR KLLLMAICVL SQWTLEQIVA TYRMTEAEGI
RYLAQLDRIG IIELRPGNRY RLRLAKTFRW RARGPVMEYF RENAVLDYFG GGFDQPGEGM
LMVHGSIGRH LAPSFVERIQ RLAHDFSQQH LQDQRLPPGQ REGYTLVLAM RSWEFTAFTA
LRRGTV
|
|---|
| |